RNA–Protein interactions for RNA: ENST00000540805.5

PROM1-220, Transcript of prominin 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PROM1, Length 3,908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-220ENST00000540805 CLIP2Q9UDT6 1046 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 ITGB4P16144 1822 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 ST5P78524 1137 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 ARID5BQ14865 1188 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 TTC6Q86TZ1 520 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 NUTM1Q86Y26 1132 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 CKAP2LQ8IYA6 745 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 RASEFQ8IZ41 740 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 CLASRPQ8N2M8 674 aaKnown RBP6.11□□□□□ -1.43
PROM1-220ENST00000540805 TDRD7Q8NHU6 1098 aaKnown RBP6.11□□□□□ -1.43
PROM1-220ENST00000540805 CNKSR2Q8WXI2 1034 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 PDRG1Q9NUG6 133 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 DDX19AQ9NUU7 478 aaKnown RBP6.11□□□□□ -1.43
PROM1-220ENST00000540805 USP27XA6NNY8 438 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 LIG1P18858 919 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 IBSPP21815 317 aaPredicted RBP6.11□□□□□ -1.43
PROM1-220ENST00000540805 CT47A1Q5JQC4 288 aaPredicted RBP6.11□□□□□ -1.43
PROM1-220ENST00000540805 SYT10Q6XYQ8 523 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 MPHOSPH8Q99549 860 aa6.11□□□□□ -1.43
PROM1-220ENST00000540805 LRRFIP2Q9Y608 721 aaKnown RBP6.11□□□□□ -1.43
PROM1-220ENST00000540805 ELP1O95163 1332 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 CPA1P15085 419 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 FLIIQ13045 1269 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 FBXO38Q6PIJ6 1188 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 RALYLQ86SE5 291 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 ZSCAN29Q8IWY8 852 aaPredicted RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 CCDC34Q96HJ3 373 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 USP44Q9H0E7 712 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 HYPKQ9NX55 129 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 CYP27B1O15528 508 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 ELF2Q15723 593 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 PROSER3Q2NL68 480 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 LRRFIP1Q32MZ4 808 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 JAKMIP1Q96N16 626 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 FSD1Q9BTV5 496 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 DACT1Q9NYF0 836 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 CALCOCO1Q9P1Z2 691 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 PATL2C9JE40 543 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 NEMFO60524 1076 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 RAB11FIP3O75154 756 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 CDC25BP30305 580 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 FAM193AP78312 1265 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 SKIDA1Q1XH10 827 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 CCDC30Q5VVM6 783 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 LARP1BQ659C4 914 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 CACTINQ8WUQ7 758 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 RUFY2Q8WXA3 655 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 DRC1Q96MC2 740 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 EPC1Q9H2F5 836 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 ZNF215Q9UL58 517 aaPredicted RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 CYP46A1Q9Y6A2 500 aa6.1□□□□□ -1.43
PROM1-220ENST00000540805 AFDNP55196 1824 aaKnown RBP6.1□□□□□ -1.43
PROM1-220ENST00000540805 GIGYF1O75420 1035 aaPredicted RBP6.09□□□□□ -1.43
PROM1-220ENST00000540805 HOXB7P09629 217 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 ZNF165P49910 485 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 PTPN14Q15678 1187 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 CWC27Q6UX04 472 aaKnown RBP6.09□□□□□ -1.43
PROM1-220ENST00000540805 ERO1AQ96HE7 468 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 SCAND2PQ9GZW5 306 aaPredicted RBP6.09□□□□□ -1.43
PROM1-220ENST00000540805 CLSTN2Q9H4D0 955 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 ABCF2Q9UG63 623 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 FBXO3Q9UK99 471 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 SPG7Q9UQ90 795 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 NPHP3Q7Z494 1330 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 TNS2Q63HR2 1409 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 GOLGA6L19H0YKK7 550 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 PDCP20941 246 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 FKBP4Q02790 459 aaKnown RBP eCLIP6.09□□□□□ -1.43
PROM1-220ENST00000540805 RNF20Q5VTR2 975 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 CADPS2Q86UW7 1296 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 FERMT3Q86UX7 667 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 PI4K2BQ8TCG2 481 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 SPATA32Q96LK8 384 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 CCDC43Q96MW1 224 aaKnown RBP6.09□□□□□ -1.43
PROM1-220ENST00000540805 C8orf37Q96NL8 207 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 PHKG2P15735 406 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 NOP2P46087 812 aaKnown RBP6.09□□□□□ -1.43
PROM1-220ENST00000540805 CCDC144BQ3MJ40 725 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 SLFNL1Q499Z3 407 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 BEND3Q5T5X7 828 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 CDC37L1Q7L3B6 337 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 CCDC144CPQ8IYA2 1237 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 NOC3LQ8WTT2 800 aaKnown RBP6.09□□□□□ -1.43
PROM1-220ENST00000540805 KAZALD1Q96I82 304 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 TM6SF1Q9BZW5 370 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 DNAJC25Q9H1X3 360 aa6.09□□□□□ -1.43
PROM1-220ENST00000540805 DISP2A7MBM2 1401 aa6.09□□□□□ -1.44
PROM1-220ENST00000540805 ERICH2A1L162 156 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 BTBD11A6QL63 1104 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 CAVIN2O95810 425 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 GPTP24298 496 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 TRIM29Q14134 588 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 AMOTQ4VCS5 1084 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 PRPF40BQ6NWY9 871 aaKnown RBP6.08□□□□□ -1.44
PROM1-220ENST00000540805 RBM43Q6ZSC3 357 aaKnown RBP6.08□□□□□ -1.44
PROM1-220ENST00000540805 RHPN1Q8TCX5 695 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 BICD2Q8TD16 824 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 TRMT1Q9NXH9 659 aaKnown RBP6.08□□□□□ -1.44
PROM1-220ENST00000540805 CHPF2Q9P2E5 772 aa6.08□□□□□ -1.44
PROM1-220ENST00000540805 COL14A1Q05707 1796 aaKnown RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms