RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GREM2Q9H772 168 aa17.45■□□□□ 0.38
SS18-204ENST00000539244 WTIPA6NIX2 430 aaPredicted RBP17.44■□□□□ 0.38
SS18-204ENST00000539244 NEURL1BA8MQ27 555 aa17.44■□□□□ 0.38
SS18-204ENST00000539244 CCT4P50991 539 aaKnown RBP17.44■□□□□ 0.38
SS18-204ENST00000539244 DACT2Q5SW24 774 aa17.44■□□□□ 0.38
SS18-204ENST00000539244 RASAL3Q86YV0 1011 aa17.44■□□□□ 0.38
SS18-204ENST00000539244 STK31Q9BXU1 1019 aa17.44■□□□□ 0.38
SS18-204ENST00000539244 MYO3BQ8WXR4 1341 aa17.44■□□□□ 0.38
SS18-204ENST00000539244 H7C1W4 665 aa17.43■□□□□ 0.38
SS18-204ENST00000539244 TRPA1O75762 1119 aa17.43■□□□□ 0.38
SS18-204ENST00000539244 MMP14P50281 582 aa17.43■□□□□ 0.38
SS18-204ENST00000539244 CWF19L2Q2TBE0 894 aaKnown RBP17.43■□□□□ 0.38
SS18-204ENST00000539244 STRIP1Q5VSL9 837 aa17.43■□□□□ 0.38
SS18-204ENST00000539244 PLA2G12BQ9BX93 195 aa17.43■□□□□ 0.38
SS18-204ENST00000539244 COA1Q9GZY4 146 aa17.43■□□□□ 0.38
SS18-204ENST00000539244 TSR2Q969E8 191 aaKnown RBP17.42■□□□□ 0.38
SS18-204ENST00000539244 LEMD3Q9Y2U8 911 aa17.42■□□□□ 0.38
SS18-204ENST00000539244 CACNA1FO60840 1977 aa17.41■□□□□ 0.38
SS18-204ENST00000539244 SLC34A2O95436 690 aa17.41■□□□□ 0.38
SS18-204ENST00000539244 TWISTNBQ3B726 338 aaPredicted RBP17.41■□□□□ 0.38
SS18-204ENST00000539244 NBPF9Q3BBW0 867 aa17.41■□□□□ 0.38
SS18-204ENST00000539244 NCBP3Q53F19 620 aaKnown RBP17.41■□□□□ 0.38
SS18-204ENST00000539244 G2E3Q7L622 706 aa17.41■□□□□ 0.38
SS18-204ENST00000539244 WWC1Q8IX03 1113 aa17.41■□□□□ 0.38
SS18-204ENST00000539244 WNT10BO00744 389 aa17.4■□□□□ 0.38
SS18-204ENST00000539244 IGHMBP2P38935 993 aaKnown RBP17.4■□□□□ 0.38
SS18-204ENST00000539244 CASP7P55210 303 aa17.4■□□□□ 0.38
SS18-204ENST00000539244 GCKRQ14397 625 aa17.4■□□□□ 0.38
SS18-204ENST00000539244 UBE3BQ7Z3V4 1068 aa17.4■□□□□ 0.38
SS18-204ENST00000539244 OGFOD1Q8N543 542 aa17.4■□□□□ 0.38
SS18-204ENST00000539244 IL16Q14005 1332 aa17.4■□□□□ 0.38
SS18-204ENST00000539244 SLC4A2P04920 1241 aa17.39■□□□□ 0.37
SS18-204ENST00000539244 CSF1RP07333 972 aa17.39■□□□□ 0.37
SS18-204ENST00000539244 TXNRD3Q86VQ6 643 aa17.39■□□□□ 0.37
SS18-204ENST00000539244 MXD3Q9BW11 206 aa17.39■□□□□ 0.37
SS18-204ENST00000539244 ITGA6P23229 1130 aa17.38■□□□□ 0.37
SS18-204ENST00000539244 FLIIQ13045 1269 aa17.38■□□□□ 0.37
SS18-204ENST00000539244 MOB2Q70IA6 237 aa17.38■□□□□ 0.37
SS18-204ENST00000539244 CTU1Q7Z7A3 348 aaKnown RBP17.38■□□□□ 0.37
SS18-204ENST00000539244 ANKRD2Q9GZV1 360 aa17.38■□□□□ 0.37
SS18-204ENST00000539244 SCAF8Q9UPN6 1271 aaKnown RBP17.38■□□□□ 0.37
SS18-204ENST00000539244 ZNF804BA4D1E1 1349 aa17.38■□□□□ 0.37
SS18-204ENST00000539244 CCDC184Q52MB2 194 aa17.37■□□□□ 0.37
SS18-204ENST00000539244 ZBED3Q96IU2 234 aaPredicted RBP17.37■□□□□ 0.37
SS18-204ENST00000539244 MYH16Q9H6N6 1097 aa17.37■□□□□ 0.37
SS18-204ENST00000539244 UBE2Q2LH0YL09 131 aa17.36■□□□□ 0.37
SS18-204ENST00000539244 PRAMEF18Q5VWM3 479 aa17.36■□□□□ 0.37
SS18-204ENST00000539244 TTLL5Q6EMB2 1281 aa17.36■□□□□ 0.37
SS18-204ENST00000539244 LINS1Q8NG48 757 aa17.36■□□□□ 0.37
SS18-204ENST00000539244 DNAAF4Q8WXU2 420 aa17.36■□□□□ 0.37
SS18-204ENST00000539244 TNRC18O15417 2968 aaPredicted RBP17.36■□□□□ 0.37
SS18-204ENST00000539244 KLRK1P26718 216 aa17.35■□□□□ 0.37
SS18-204ENST00000539244 NF2P35240 595 aa17.35■□□□□ 0.37
SS18-204ENST00000539244 TM4SF4P48230 202 aa17.35■□□□□ 0.37
SS18-204ENST00000539244 NOM1Q5C9Z4 860 aaKnown RBP17.35■□□□□ 0.37
SS18-204ENST00000539244 APOBEC3FQ8IUX4 373 aaKnown RBP17.35■□□□□ 0.37
SS18-204ENST00000539244 MPHOSPH8Q99549 860 aa17.35■□□□□ 0.37
SS18-204ENST00000539244 IRS2Q9Y4H2 1338 aa17.35■□□□□ 0.37
SS18-204ENST00000539244 PDE4DIPQ5VU43 2346 aa17.35■□□□□ 0.37
SS18-204ENST00000539244 A0A1B0GUL6 1792 aa17.34■□□□□ 0.37
SS18-204ENST00000539244 SASH1O94885 1247 aa17.34■□□□□ 0.37
SS18-204ENST00000539244 COL1A1P02452 1464 aaPredicted RBP17.34■□□□□ 0.37
SS18-204ENST00000539244 CHRNDQ07001 517 aa17.34■□□□□ 0.37
SS18-204ENST00000539244 FKBP5Q13451 457 aaPredicted RBP17.34■□□□□ 0.37
SS18-204ENST00000539244 C15orf52Q6ZUT6 534 aaKnown RBP17.34■□□□□ 0.37
SS18-204ENST00000539244 FBXW7Q969H0 707 aa17.34■□□□□ 0.37
SS18-204ENST00000539244 HDAC9Q9UKV0 1011 aa17.34■□□□□ 0.37
SS18-204ENST00000539244 FANCIQ9NVI1 1328 aa17.33■□□□□ 0.36
SS18-204ENST00000539244 GTF2IP78347 998 aa17.33■□□□□ 0.36
SS18-204ENST00000539244 PKN2Q16513 984 aaKnown RBP17.33■□□□□ 0.36
SS18-204ENST00000539244 KIAA0825Q8IV33 1275 aa17.33■□□□□ 0.36
SS18-204ENST00000539244 CFHR5Q9BXR6 569 aa17.33■□□□□ 0.36
SS18-204ENST00000539244 CD209Q9NNX6 404 aa17.33■□□□□ 0.36
SS18-204ENST00000539244 VAMP4O75379 141 aa17.32■□□□□ 0.36
SS18-204ENST00000539244 TTLL12Q14166 644 aaPredicted RBP17.32■□□□□ 0.36
SS18-204ENST00000539244 LDLRAD1Q5T700 205 aa17.32■□□□□ 0.36
SS18-204ENST00000539244 ARMC9Q7Z3E5 817 aa17.32■□□□□ 0.36
SS18-204ENST00000539244 MTMR14Q8NCE2 650 aa17.32■□□□□ 0.36
SS18-204ENST00000539244 ECM29Q5VYK3 1845 aa17.32■□□□□ 0.36
SS18-204ENST00000539244 ANKRD18BA2A2Z9 1011 aa17.31■□□□□ 0.36
SS18-204ENST00000539244 KCNJ4P48050 445 aa17.31■□□□□ 0.36
SS18-204ENST00000539244 SOX10P56693 466 aa17.31■□□□□ 0.36
SS18-204ENST00000539244 FOXO4P98177 505 aa17.31■□□□□ 0.36
SS18-204ENST00000539244 PTPN12Q05209 780 aaKnown RBP17.31■□□□□ 0.36
SS18-204ENST00000539244 SREBF2Q12772 1141 aa17.31■□□□□ 0.36
SS18-204ENST00000539244 ZNF296Q8WUU4 475 aaPredicted RBP17.31■□□□□ 0.36
SS18-204ENST00000539244 TBC1D8O95759 1140 aa17.3■□□□□ 0.36
SS18-204ENST00000539244 MAP3K11Q16584 847 aa17.3■□□□□ 0.36
SS18-204ENST00000539244 WDR63Q8IWG1 891 aa17.3■□□□□ 0.36
SS18-204ENST00000539244 CERS5Q8N5B7 392 aa17.3■□□□□ 0.36
SS18-204ENST00000539244 HPS5Q9UPZ3 1129 aa17.3■□□□□ 0.36
SS18-204ENST00000539244 LAMB1P07942 1786 aa17.3■□□□□ 0.36
SS18-204ENST00000539244 GPR25O00155 361 aa17.29■□□□□ 0.36
SS18-204ENST00000539244 IL1R1P14778 569 aa17.29■□□□□ 0.36
SS18-204ENST00000539244 FKBP1AP62942 108 aaKnown RBP17.29■□□□□ 0.36
SS18-204ENST00000539244 IFIT5Q13325 482 aaKnown RBP17.29■□□□□ 0.36
SS18-204ENST00000539244 BEND3Q5T5X7 828 aa17.29■□□□□ 0.36
SS18-204ENST00000539244 SNAP23O00161 211 aa17.28■□□□□ 0.36
SS18-204ENST00000539244 TAF5LO75529 589 aa17.28■□□□□ 0.36
SS18-204ENST00000539244 DLGAP5Q15398 846 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms