RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 STRIP1Q5VSL9 837 aa25.9■■□□□ 1.74
VPS28-206ENST00000526734 WTIPA6NIX2 430 aaPredicted RBP25.89■■□□□ 1.74
VPS28-206ENST00000526734 IPO8O15397 1037 aaKnown RBP25.89■■□□□ 1.74
VPS28-206ENST00000526734 ZNF280AP59817 542 aaPredicted RBP25.89■■□□□ 1.74
VPS28-206ENST00000526734 CDC37L1Q7L3B6 337 aa25.89■■□□□ 1.74
VPS28-206ENST00000526734 ANKRD44Q8N8A2 993 aa25.89■■□□□ 1.74
VPS28-206ENST00000526734 CNTNAP1P78357 1384 aa25.88■■□□□ 1.73
VPS28-206ENST00000526734 TXNRD3Q86VQ6 643 aa25.88■■□□□ 1.73
VPS28-206ENST00000526734 ZNF594Q96JF6 807 aaPredicted RBP25.88■■□□□ 1.73
VPS28-206ENST00000526734 GMLQ99445 158 aa25.88■■□□□ 1.73
VPS28-206ENST00000526734 MROH5Q6ZUA9 1318 aa25.88■■□□□ 1.73
VPS28-206ENST00000526734 SHTN1A0MZ66 631 aa25.87■■□□□ 1.73
VPS28-206ENST00000526734 KIF4BQ2VIQ3 1234 aa25.87■■□□□ 1.73
VPS28-206ENST00000526734 TBC1D10BQ4KMP7 808 aaPredicted RBP25.87■■□□□ 1.73
VPS28-206ENST00000526734 SAMD7Q7Z3H4 446 aa25.87■■□□□ 1.73
VPS28-206ENST00000526734 ZNF804AQ7Z570 1209 aa25.87■■□□□ 1.73
VPS28-206ENST00000526734 ZBED9Q6R2W3 1325 aa25.87■■□□□ 1.73
VPS28-206ENST00000526734 IRS2Q9Y4H2 1338 aa25.87■■□□□ 1.73
VPS28-206ENST00000526734 TAF5LO75529 589 aa25.86■■□□□ 1.73
VPS28-206ENST00000526734 USP17L8P0C7I0 530 aa25.86■■□□□ 1.73
VPS28-206ENST00000526734 UBTFL1P0CB47 393 aaPredicted RBP25.86■■□□□ 1.73
VPS28-206ENST00000526734 DACT2Q5SW24 774 aa25.86■■□□□ 1.73
VPS28-206ENST00000526734 HELBQ8NG08 1087 aaPredicted RBP25.86■■□□□ 1.73
VPS28-206ENST00000526734 A0A1B0GUL6 1792 aa25.85■■□□□ 1.73
VPS28-206ENST00000526734 KLRK1P26718 216 aa25.85■■□□□ 1.73
VPS28-206ENST00000526734 UBE4AQ14139 1066 aa25.85■■□□□ 1.73
VPS28-206ENST00000526734 CD209Q9NNX6 404 aa25.85■■□□□ 1.73
VPS28-206ENST00000526734 MKRN1Q9UHC7 482 aaKnown RBP25.84■■□□□ 1.73
VPS28-206ENST00000526734 RASSF10A6NK89 507 aa25.83■■□□□ 1.73
VPS28-206ENST00000526734 INTS3Q68E01 1043 aaKnown RBP25.83■■□□□ 1.73
VPS28-206ENST00000526734 TTLL5Q6EMB2 1281 aa25.83■■□□□ 1.73
VPS28-206ENST00000526734 OGFOD1Q8N543 542 aa25.83■■□□□ 1.73
VPS28-206ENST00000526734 DCPSQ96C86 337 aaKnown RBP25.83■■□□□ 1.73
VPS28-206ENST00000526734 GLIS2Q9BZE0 524 aaPredicted RBP25.83■■□□□ 1.73
VPS28-206ENST00000526734 RIPOR2Q9Y4F9 1068 aa25.83■■□□□ 1.73
VPS28-206ENST00000526734 TRAF5O00463 557 aa25.82■■□□□ 1.72
VPS28-206ENST00000526734 RBM26Q5T8P6 1007 aaKnown RBP25.82■■□□□ 1.72
VPS28-206ENST00000526734 FBXW7Q969H0 707 aa25.82■■□□□ 1.72
VPS28-206ENST00000526734 MYOZ2Q9NPC6 264 aa25.82■■□□□ 1.72
VPS28-206ENST00000526734 ABT1Q9ULW3 272 aaKnown RBP25.82■■□□□ 1.72
VPS28-206ENST00000526734 PLIN1O60240 522 aa25.81■■□□□ 1.72
VPS28-206ENST00000526734 EGFRP00533 1210 aa25.81■■□□□ 1.72
VPS28-206ENST00000526734 IL1R1P14778 569 aa25.81■■□□□ 1.72
VPS28-206ENST00000526734 SNAP23O00161 211 aa25.8■■□□□ 1.72
VPS28-206ENST00000526734 DEFB115Q30KQ5 88 aa25.8■■□□□ 1.72
VPS28-206ENST00000526734 ATF7IPQ6VMQ6 1270 aa25.8■■□□□ 1.72
VPS28-206ENST00000526734 KRT26Q7Z3Y9 468 aa25.8■■□□□ 1.72
VPS28-206ENST00000526734 PUS3Q9BZE2 481 aaKnown RBP25.8■■□□□ 1.72
VPS28-206ENST00000526734 FBXO3Q9UK99 471 aa25.8■■□□□ 1.72
VPS28-206ENST00000526734 TRPM7Q96QT4 1865 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 GNAI3P08754 354 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 FKBP1AP62942 108 aaKnown RBP25.79■■□□□ 1.72
VPS28-206ENST00000526734 GTF2IP78347 998 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 METTL24Q5JXM2 366 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 CST9Q5W186 159 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 GGA3Q9NZ52 723 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 HDAC9Q9UKV0 1011 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 PITPNM2Q9BZ72 1349 aa25.79■■□□□ 1.72
VPS28-206ENST00000526734 CELF2O95319 508 aaKnown RBP25.78■■□□□ 1.72
VPS28-206ENST00000526734 SULF1Q8IWU6 871 aa25.78■■□□□ 1.72
VPS28-206ENST00000526734 TLL2Q9Y6L7 1015 aa25.78■■□□□ 1.72
VPS28-206ENST00000526734 ZNF646O15015 1829 aaPredicted RBP25.77■■□□□ 1.72
VPS28-206ENST00000526734 TRIM27P14373 513 aa25.77■■□□□ 1.72
VPS28-206ENST00000526734 FMR1Q06787 632 aaKnown RBP eCLIP25.77■■□□□ 1.72
VPS28-206ENST00000526734 USP48Q86UV5 1035 aa25.77■■□□□ 1.72
VPS28-206ENST00000526734 EYA2O00167 538 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 BCAR3O75815 825 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 PDE8BO95263 885 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 ECE1P42892 770 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 RFX5P48382 616 aaPredicted RBP25.76■■□□□ 1.71
VPS28-206ENST00000526734 SCARF1Q14162 830 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 LRRC24Q50LG9 513 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 FRAT1Q92837 279 aaPredicted RBP25.76■■□□□ 1.71
VPS28-206ENST00000526734 HHIPL1Q96JK4 782 aa25.76■■□□□ 1.71
VPS28-206ENST00000526734 HIBADHP31937 336 aaKnown RBP25.75■■□□□ 1.71
VPS28-206ENST00000526734 VEGFBP49765 207 aa25.75■■□□□ 1.71
VPS28-206ENST00000526734 ZKSCAN2Q63HK3 967 aa25.75■■□□□ 1.71
VPS28-206ENST00000526734 VGLL2Q8N8G2 317 aa25.75■■□□□ 1.71
VPS28-206ENST00000526734 MEIS3Q99687 375 aa25.75■■□□□ 1.71
VPS28-206ENST00000526734 FAM205AQ6ZU69 1335 aa25.74■■□□□ 1.71
VPS28-206ENST00000526734 SASH1O94885 1247 aa25.74■■□□□ 1.71
VPS28-206ENST00000526734 PTPN12Q05209 780 aaKnown RBP25.74■■□□□ 1.71
VPS28-206ENST00000526734 MXD3Q9BW11 206 aa25.74■■□□□ 1.71
VPS28-206ENST00000526734 LRRFIP2Q9Y608 721 aaKnown RBP25.74■■□□□ 1.71
VPS28-206ENST00000526734 CIAO1O76071 339 aa25.73■■□□□ 1.71
VPS28-206ENST00000526734 PUM3Q15397 648 aaKnown RBP25.73■■□□□ 1.71
VPS28-206ENST00000526734 CAVIN4Q5BKX8 364 aa25.73■■□□□ 1.71
VPS28-206ENST00000526734 ANGEL2Q5VTE6 544 aaKnown RBP25.73■■□□□ 1.71
VPS28-206ENST00000526734 SAPCD2Q86UD0 394 aa25.73■■□□□ 1.71
VPS28-206ENST00000526734 TDRD7Q8NHU6 1098 aaKnown RBP25.73■■□□□ 1.71
VPS28-206ENST00000526734 KLHDC4Q8TBB5 520 aa25.73■■□□□ 1.71
VPS28-206ENST00000526734 FAM84BQ96KN1 310 aaPredicted RBP25.73■■□□□ 1.71
VPS28-206ENST00000526734 ZNF408Q9H9D4 720 aa25.73■■□□□ 1.71
VPS28-206ENST00000526734 KIAA0825Q8IV33 1275 aa25.72■■□□□ 1.71
VPS28-206ENST00000526734 ADM5C9JUS6 153 aa25.71■■□□□ 1.71
VPS28-206ENST00000526734 IFIT1P09914 478 aaKnown RBP25.71■■□□□ 1.71
VPS28-206ENST00000526734 GYG1P46976 350 aa25.71■■□□□ 1.71
VPS28-206ENST00000526734 VPS37DQ86XT2 251 aa25.71■■□□□ 1.71
VPS28-206ENST00000526734 WDR33Q9C0J8 1336 aaKnown RBP25.7■■□□□ 1.71
VPS28-206ENST00000526734 WNT10BO00744 389 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms