RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 NEUROD6Q96NK8 337 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 ZNF277Q9NRM2 450 aaPredicted RBP16.91■□□□□ 0.3
CD44-224ENST00000526669 LEMD3Q9Y2U8 911 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 FPGT-TNNI3KV9GXZ4 949 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 MYH7P12883 1935 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 KDM2BQ8NHM5 1336 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 COL4A5P29400 1685 aa16.91■□□□□ 0.3
CD44-224ENST00000526669 A0A1B0GUL7 405 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 SLC5A1P13866 664 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 FGFR2P21802 821 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 UBE4AQ14139 1066 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 AACSQ86V21 672 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 TXNRD3Q86VQ6 643 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 CCDC8Q9H0W5 538 aaPredicted RBP16.9■□□□□ 0.3
CD44-224ENST00000526669 TAOK3Q9H2K8 898 aa16.9■□□□□ 0.3
CD44-224ENST00000526669 TLR7Q9NYK1 1049 aaKnown RBP16.9■□□□□ 0.3
CD44-224ENST00000526669 AOC3Q16853 763 aa16.89■□□□□ 0.29
CD44-224ENST00000526669 EAF2Q96CJ1 260 aaPredicted RBP16.89■□□□□ 0.29
CD44-224ENST00000526669 PSMD1Q99460 953 aa16.89■□□□□ 0.29
CD44-224ENST00000526669 RTFDC1Q9BY42 306 aaPredicted RBP16.89■□□□□ 0.29
CD44-224ENST00000526669 LNPKQ9C0E8 428 aa16.89■□□□□ 0.29
CD44-224ENST00000526669 ZBTB47Q9UFB7 747 aaPredicted RBP16.89■□□□□ 0.29
CD44-224ENST00000526669 AKAP2Q9Y2D5 859 aa16.89■□□□□ 0.29
CD44-224ENST00000526669 PPIP5K2O43314 1243 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 IFIT1P09914 478 aaKnown RBP16.88■□□□□ 0.29
CD44-224ENST00000526669 GYG1P46976 350 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 PRELPP51888 382 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 CENPQQ7L2Z9 268 aaPredicted RBP16.88■□□□□ 0.29
CD44-224ENST00000526669 CLASRPQ8N2M8 674 aaKnown RBP16.88■□□□□ 0.29
CD44-224ENST00000526669 SUPT20HQ8NEM7 779 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 LPIN2Q92539 896 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 EYA3Q99504 573 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 DBNDD2Q9BQY9 259 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 IRS2Q9Y4H2 1338 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 MED23Q9ULK4 1368 aa16.88■□□□□ 0.29
CD44-224ENST00000526669 IARSP41252 1262 aaKnown RBP16.87■□□□□ 0.29
CD44-224ENST00000526669 DOK7Q18PE1 504 aa16.87■□□□□ 0.29
CD44-224ENST00000526669 WASHC4Q2M389 1173 aa16.87■□□□□ 0.29
CD44-224ENST00000526669 GRIPAP1Q4V328 841 aa16.87■□□□□ 0.29
CD44-224ENST00000526669 C16orf71Q8IYS4 520 aaPredicted RBP16.87■□□□□ 0.29
CD44-224ENST00000526669 XAGE2Q96GT9 111 aa16.87■□□□□ 0.29
CD44-224ENST00000526669 GPR108Q9NPR9 543 aa16.87■□□□□ 0.29
CD44-224ENST00000526669 IFIT2P09913 472 aaKnown RBP16.86■□□□□ 0.29
CD44-224ENST00000526669 SKAP1Q86WV1 359 aa16.86■□□□□ 0.29
CD44-224ENST00000526669 LARGE2Q8N3Y3 721 aa16.86■□□□□ 0.29
CD44-224ENST00000526669 OTUD7AQ8TE49 926 aaPredicted RBP16.86■□□□□ 0.29
CD44-224ENST00000526669 ZC3H12CQ9C0D7 883 aaKnown RBP16.86■□□□□ 0.29
CD44-224ENST00000526669 DBNDD1Q9H9R9 158 aa16.86■□□□□ 0.29
CD44-224ENST00000526669 DBNLQ9UJU6 430 aaKnown RBP16.86■□□□□ 0.29
CD44-224ENST00000526669 IQSEC3Q9UPP2 1182 aaPredicted RBP16.86■□□□□ 0.29
CD44-224ENST00000526669 LTBP3Q9NS15 1303 aa16.86■□□□□ 0.29
CD44-224ENST00000526669 UTRNP46939 3433 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 GRIN3BO60391 1043 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 PHKA1P46020 1223 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 BCAMP50895 628 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 NUCB1Q02818 461 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 KIAA2012Q0VF49 1180 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 GORABQ5T7V8 394 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 CHD1LQ86WJ1 897 aa16.85■□□□□ 0.29
CD44-224ENST00000526669 G3V3G9 751 aa16.84■□□□□ 0.29
CD44-224ENST00000526669 DCAF8Q5TAQ9 597 aa16.84■□□□□ 0.29
CD44-224ENST00000526669 TSHZ3Q63HK5 1081 aa16.84■□□□□ 0.29
CD44-224ENST00000526669 FAM84BQ96KN1 310 aaPredicted RBP16.84■□□□□ 0.29
CD44-224ENST00000526669 DOCK2Q92608 1830 aa16.84■□□□□ 0.29
CD44-224ENST00000526669 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
CD44-224ENST00000526669 ECE2O60344 883 aa16.83■□□□□ 0.28
CD44-224ENST00000526669 HIBADHP31937 336 aaKnown RBP16.83■□□□□ 0.28
CD44-224ENST00000526669 C15orf52Q6ZUT6 534 aaKnown RBP16.83■□□□□ 0.28
CD44-224ENST00000526669 ZNF804AQ7Z570 1209 aa16.83■□□□□ 0.28
CD44-224ENST00000526669 VPS37DQ86XT2 251 aa16.83■□□□□ 0.28
CD44-224ENST00000526669 MYH2Q9UKX2 1941 aa16.83■□□□□ 0.28
CD44-224ENST00000526669 LMNB1P20700 586 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 PDE4AP27815 886 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 CAVIN4Q5BKX8 364 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 TTC39AQ5SRH9 613 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 CCDC102BQ68D86 513 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 FBXO33Q7Z6M2 555 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 NIM1KQ8IY84 436 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 FBXW7Q969H0 707 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 RNF181Q9P0P0 153 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 JAG2Q9Y219 1238 aa16.82■□□□□ 0.28
CD44-224ENST00000526669 COL1A1P02452 1464 aaPredicted RBP16.81■□□□□ 0.28
CD44-224ENST00000526669 C9orf131Q5VYM1 1079 aa16.81■□□□□ 0.28
CD44-224ENST00000526669 CD209Q9NNX6 404 aa16.81■□□□□ 0.28
CD44-224ENST00000526669 ADAMTSL1Q8N6G6 1762 aa16.81■□□□□ 0.28
CD44-224ENST00000526669 YDJCA8MPS7 323 aa16.8■□□□□ 0.28
CD44-224ENST00000526669 FRAT2O75474 233 aaPredicted RBP16.8■□□□□ 0.28
CD44-224ENST00000526669 CHAF1AQ13111 956 aaPredicted RBP16.8■□□□□ 0.28
CD44-224ENST00000526669 CCDC158Q5M9N0 1113 aa16.8■□□□□ 0.28
CD44-224ENST00000526669 COA1Q9GZY4 146 aa16.8■□□□□ 0.28
CD44-224ENST00000526669 KCNQ5Q9NR82 932 aa16.8■□□□□ 0.28
CD44-224ENST00000526669 SALL3Q9BXA9 1300 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 SCARF1Q14162 830 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 PI16Q6UXB8 463 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 JDP2Q8WYK2 163 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 SNRKQ9NRH2 765 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 NDUFB9Q9Y6M9 179 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 MAST2Q6P0Q8 1798 aa16.79■□□□□ 0.28
CD44-224ENST00000526669 MX1P20591 662 aa16.78■□□□□ 0.28
CD44-224ENST00000526669 ARID4AP29374 1257 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms