RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 ANO2Q9NQ90 1003 aa6.97□□□□□ -1.29
CD44-219ENST00000525685 LINC01387J3KSC0 135 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 NFKBIEO00221 500 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 ACPPP15309 386 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 AAMPQ13685 434 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 GALNT11Q8NCW6 608 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 POP1Q99575 1024 aaKnown RBP6.96□□□□□ -1.3
CD44-219ENST00000525685 CCDC87Q9NVE4 849 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 EGFL7Q9UHF1 273 aa6.96□□□□□ -1.3
CD44-219ENST00000525685 TM4SF5O14894 197 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 ICMTO60725 284 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 TNFRSF21O75509 655 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 PTPRAP18433 802 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 EPHA1P21709 976 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 USP5P45974 858 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 TMEM130Q8N3G9 435 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 DCAF11Q8TEB1 546 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 PMEPA1Q969W9 287 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 TP53INP1Q96A56 240 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 MEGF10Q96KG7 1140 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 ADAM19Q9H013 955 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 MRPL18Q9H0U6 180 aaKnown RBP6.95□□□□□ -1.3
CD44-219ENST00000525685 DZANK1Q9NVP4 752 aa6.95□□□□□ -1.3
CD44-219ENST00000525685 ZBTB7CA1YPR0 619 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 F8W735 103 aaPredicted RBP6.94□□□□□ -1.3
CD44-219ENST00000525685 SERPINB4P48594 390 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 EHHADHQ08426 723 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 TXNDC11Q6PKC3 985 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 GJD3Q8N144 294 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 SNX29Q8TEQ0 813 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 AKTIPQ9H8T0 292 aa6.94□□□□□ -1.3
CD44-219ENST00000525685 SH2B1Q9NRF2 756 aaPredicted RBP6.94□□□□□ -1.3
CD44-219ENST00000525685 EREGO14944 169 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 TRPA1O75762 1119 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 ALX3O95076 343 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 BRD1O95696 1058 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 CDC25BP30305 580 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 ECM1Q16610 540 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 FOXD4L6Q3SYB3 417 aaPredicted RBP6.93□□□□□ -1.3
CD44-219ENST00000525685 PRSS36Q5K4E3 855 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 FOXD4L3Q6VB84 417 aaPredicted RBP6.93□□□□□ -1.3
CD44-219ENST00000525685 Q6ZS46 218 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 DZIP1LQ8IYY4 767 aaKnown RBP6.93□□□□□ -1.3
CD44-219ENST00000525685 HHIPQ96QV1 700 aa6.93□□□□□ -1.3
CD44-219ENST00000525685 FOXD3Q9UJU5 478 aaPredicted RBP6.93□□□□□ -1.3
CD44-219ENST00000525685 PATL2C9JE40 543 aaKnown RBP6.92□□□□□ -1.3
CD44-219ENST00000525685 PDE2AO00408 941 aaPredicted RBP6.92□□□□□ -1.3
CD44-219ENST00000525685 FSCN2O14926 492 aa6.92□□□□□ -1.3
CD44-219ENST00000525685 PHACTR2O75167 634 aa6.92□□□□□ -1.3
CD44-219ENST00000525685 CD68P34810 354 aaPredicted RBP6.92□□□□□ -1.3
CD44-219ENST00000525685 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.92□□□□□ -1.3
CD44-219ENST00000525685 CARD10Q9BWT7 1032 aa6.92□□□□□ -1.3
CD44-219ENST00000525685 KCNK4Q9NYG8 393 aa6.92□□□□□ -1.3
CD44-219ENST00000525685 H3BRB1 525 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 H3BRJ5 948 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 WISP1O95388 367 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 FAM117BQ6P1L5 589 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 TXNDC2Q86VQ3 553 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 Q8N3U1 123 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 TMEM102Q8N9M5 508 aaPredicted RBP6.91□□□□□ -1.3
CD44-219ENST00000525685 KLHL23Q8NBE8 558 aa6.91□□□□□ -1.3
CD44-219ENST00000525685 TUT1Q9H6E5 874 aaKnown RBP6.91□□□□□ -1.3
CD44-219ENST00000525685 EDN3P14138 238 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 ARHGAP4P98171 946 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 ZMYM1Q5SVZ6 1142 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 GLYCTKQ8IVS8 523 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 AGGF1Q8N302 714 aaeCLIP6.9□□□□□ -1.3
CD44-219ENST00000525685 CCER1Q8TC90 406 aaPredicted RBP6.9□□□□□ -1.3
CD44-219ENST00000525685 NXPE3Q969Y0 559 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 OSMRQ99650 979 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 ZKSCAN3Q9BRR0 538 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 SOX13Q9UN79 622 aa6.9□□□□□ -1.3
CD44-219ENST00000525685 FAM177BA6PVY3 158 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 CABP4P57796 275 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 PIP4K2BP78356 416 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 XP32Q5T750 250 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 PEAR1Q5VY43 1037 aaPredicted RBP6.89□□□□□ -1.31
CD44-219ENST00000525685 WNT8BQ93098 351 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 KLHDC7BQ96G42 594 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 ZFYVE28Q9HCC9 887 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 SEC31BQ9NQW1 1179 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 AMOTL2Q9Y2J4 779 aa6.89□□□□□ -1.31
CD44-219ENST00000525685 DDX3YO15523 660 aaKnown RBP6.88□□□□□ -1.31
CD44-219ENST00000525685 ADAM11O75078 769 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 KCNA1Q09470 495 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 PRR23CQ6ZRP0 262 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 ACAD11Q709F0 780 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 FOXD4L4Q8WXT5 416 aaPredicted RBP6.88□□□□□ -1.31
CD44-219ENST00000525685 OSGEPQ9NPF4 335 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 LATS2Q9NRM7 1088 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 BRPF3Q9ULD4 1205 aa6.88□□□□□ -1.31
CD44-219ENST00000525685 GLB1P16278 677 aa6.87□□□□□ -1.31
CD44-219ENST00000525685 KIAA1211Q6ZU35 1233 aa6.87□□□□□ -1.31
CD44-219ENST00000525685 BSNDQ8WZ55 320 aa6.87□□□□□ -1.31
CD44-219ENST00000525685 UBL7Q96S82 380 aaPredicted RBP6.87□□□□□ -1.31
CD44-219ENST00000525685 BHLHE41Q9C0J9 482 aaPredicted RBP6.87□□□□□ -1.31
CD44-219ENST00000525685 POLR3DP05423 398 aaPredicted RBP6.86□□□□□ -1.31
CD44-219ENST00000525685 DUOXA2Q1HG44 320 aa6.86□□□□□ -1.31
CD44-219ENST00000525685 HGSNATQ68CP4 663 aa6.86□□□□□ -1.31
CD44-219ENST00000525685 VN1R5Q7Z5H4 357 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms