RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SETDB1Q15047 1291 aa7.7□□□□□ -1.18
CD44-217ENST00000525348 PEAR1Q5VY43 1037 aaPredicted RBP7.7□□□□□ -1.18
CD44-217ENST00000525348 TXNDC11Q6PKC3 985 aa7.7□□□□□ -1.18
CD44-217ENST00000525348 ZKSCAN3Q9BRR0 538 aa7.7□□□□□ -1.18
CD44-217ENST00000525348 SH2B1Q9NRF2 756 aaPredicted RBP7.7□□□□□ -1.18
CD44-217ENST00000525348 DLL1O00548 723 aa7.69□□□□□ -1.18
CD44-217ENST00000525348 TM4SF5O14894 197 aa7.69□□□□□ -1.18
CD44-217ENST00000525348 EPHA1P21709 976 aa7.69□□□□□ -1.18
CD44-217ENST00000525348 PMEPA1Q969W9 287 aa7.69□□□□□ -1.18
CD44-217ENST00000525348 AMOTL2Q9Y2J4 779 aa7.69□□□□□ -1.18
CD44-217ENST00000525348 LINC01387J3KSC0 135 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 CDC27P30260 824 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 KCNA1Q09470 495 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 ADGRE1Q14246 886 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 MBTPS1Q14703 1052 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 GALNT11Q8NCW6 608 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 LENG1Q96BZ8 264 aaPredicted RBP7.68□□□□□ -1.18
CD44-217ENST00000525348 OSMRQ99650 979 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 RBCK1Q9BYM8 510 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 ADAM19Q9H013 955 aa7.68□□□□□ -1.18
CD44-217ENST00000525348 BIN2Q9UBW5 565 aaPredicted RBP7.68□□□□□ -1.18
CD44-217ENST00000525348 PDE2AO00408 941 aaPredicted RBP7.67□□□□□ -1.18
CD44-217ENST00000525348 CDC25BP30305 580 aa7.67□□□□□ -1.18
CD44-217ENST00000525348 GATA4P43694 442 aa7.67□□□□□ -1.18
CD44-217ENST00000525348 TMEM102Q8N9M5 508 aaPredicted RBP7.67□□□□□ -1.18
CD44-217ENST00000525348 NXPE3Q969Y0 559 aa7.67□□□□□ -1.18
CD44-217ENST00000525348 NACC1Q96RE7 527 aa7.67□□□□□ -1.18
CD44-217ENST00000525348 CITED4Q96RK1 184 aa7.67□□□□□ -1.18
CD44-217ENST00000525348 PPME1Q9Y570 386 aa7.67□□□□□ -1.18
CD44-217ENST00000525348 C9orf172C9J069 976 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 EDN3P14138 238 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 PTPRAP18433 802 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 DOC2BQ14184 412 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 TMC7Q7Z402 723 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 GALNT12Q8IXK2 581 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 CACTIN-AS1Q8N1I8 211 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 NIF3L1Q9GZT8 377 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 SOX13Q9UN79 622 aa7.66□□□□□ -1.18
CD44-217ENST00000525348 PDE3BQ13370 1112 aa7.65□□□□□ -1.18
CD44-217ENST00000525348 HGSNATQ68CP4 663 aa7.65□□□□□ -1.18
CD44-217ENST00000525348 CARD10Q9BWT7 1032 aa7.65□□□□□ -1.18
CD44-217ENST00000525348 KCNK4Q9NYG8 393 aa7.65□□□□□ -1.18
CD44-217ENST00000525348 DCTN4Q9UJW0 460 aa7.65□□□□□ -1.18
CD44-217ENST00000525348 A0A1W2PP55 124 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 METTL12A8MUP2 240 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 FURINP09958 794 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 FOXD4L6Q3SYB3 417 aaPredicted RBP7.64□□□□□ -1.19
CD44-217ENST00000525348 IGF2-ASQ6U949 168 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 FOXD4L3Q6VB84 417 aaPredicted RBP7.64□□□□□ -1.19
CD44-217ENST00000525348 BHLHE41Q9C0J9 482 aaPredicted RBP7.64□□□□□ -1.19
CD44-217ENST00000525348 MUC3BQ9H195 1237 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 TPSG1Q9NRR2 321 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 USP21Q9UK80 565 aa7.64□□□□□ -1.19
CD44-217ENST00000525348 EIF1AYO14602 144 aaKnown RBP7.63□□□□□ -1.19
CD44-217ENST00000525348 FSCN2O14926 492 aa7.63□□□□□ -1.19
CD44-217ENST00000525348 WISP1O95388 367 aa7.63□□□□□ -1.19
CD44-217ENST00000525348 VN1R5Q7Z5H4 357 aa7.63□□□□□ -1.19
CD44-217ENST00000525348 TXNRD3Q86VQ6 643 aa7.63□□□□□ -1.19
CD44-217ENST00000525348 TMC1Q8TDI8 760 aa7.63□□□□□ -1.19
CD44-217ENST00000525348 SRA1Q9HD15 236 aaKnown RBP7.63□□□□□ -1.19
CD44-217ENST00000525348 H3BRJ5 948 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 ADAM11O75078 769 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 CPNE3O75131 537 aaKnown RBP7.62□□□□□ -1.19
CD44-217ENST00000525348 MAPK1P28482 360 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 NOS3P29474 1203 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 MAP4K3Q8IVH8 894 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 WFDC12Q8WWY7 111 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 ALKBH8Q96BT7 664 aaKnown RBP7.62□□□□□ -1.19
CD44-217ENST00000525348 DMRTB1Q96MA1 342 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 TCF12Q99081 682 aa7.62□□□□□ -1.19
CD44-217ENST00000525348 SSBP4Q9BWG4 385 aaPredicted RBP7.62□□□□□ -1.19
CD44-217ENST00000525348 DDX3YO15523 660 aaKnown RBP7.61□□□□□ -1.19
CD44-217ENST00000525348 ALX3O95076 343 aa7.61□□□□□ -1.19
CD44-217ENST00000525348 IREB2P48200 963 aaKnown RBP7.61□□□□□ -1.19
CD44-217ENST00000525348 NRG1Q02297 640 aaPredicted RBP7.61□□□□□ -1.19
CD44-217ENST00000525348 DSC3Q14574 896 aa7.61□□□□□ -1.19
CD44-217ENST00000525348 CCNJLQ8IV13 435 aa7.61□□□□□ -1.19
CD44-217ENST00000525348 FOXD4L4Q8WXT5 416 aaPredicted RBP7.61□□□□□ -1.19
CD44-217ENST00000525348 KLHDC7BQ96G42 594 aa7.61□□□□□ -1.19
CD44-217ENST00000525348 CSRNP1Q96S65 589 aa7.61□□□□□ -1.19
CD44-217ENST00000525348 NPHS2Q9NP85 383 aa7.61□□□□□ -1.19
CD44-217ENST00000525348 F8W735 103 aaPredicted RBP7.6□□□□□ -1.19
CD44-217ENST00000525348 CD68P34810 354 aaPredicted RBP7.6□□□□□ -1.19
CD44-217ENST00000525348 GRIA4P48058 902 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 RSPO4Q2I0M5 234 aaPredicted RBP7.6□□□□□ -1.19
CD44-217ENST00000525348 SPRED3Q2MJR0 410 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 KIAA0319Q5VV43 1072 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 AGGF1Q8N302 714 aaeCLIP7.6□□□□□ -1.19
CD44-217ENST00000525348 ASAP3Q8TDY4 903 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 BSNDQ8WZ55 320 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 CCDC74AQ96AQ1 378 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 MEGF10Q96KG7 1140 aa7.6□□□□□ -1.19
CD44-217ENST00000525348 ADAM23O75077 832 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 NEFLP07196 543 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 PDIA4P13667 645 aaKnown RBP7.59□□□□□ -1.19
CD44-217ENST00000525348 ITGB7P26010 798 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 PIP4K2BP78356 416 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 NKAPLQ5M9Q1 402 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 AEBP1Q8IUX7 1158 aa7.59□□□□□ -1.19
CD44-217ENST00000525348 UBASH3BQ8TF42 649 aa7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms