RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CHMP5Q9NZZ3 219 aa10.43□□□□□ -0.74
LIMCH1-209ENST00000509277 GYG1P46976 350 aa10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 CAVIN1Q6NZI2 390 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 GOLIM4O00461 696 aa10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 RFX5P48382 616 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 NOL8Q76FK4 1167 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 COPRSQ9NQ92 184 aa10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 H0YIN7 160 aa10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 RABL6Q3YEC7 729 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 CCDC158Q5M9N0 1113 aa10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 DBNLQ9UJU6 430 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 UTYO14607 1347 aa10.42□□□□□ -0.74
LIMCH1-209ENST00000509277 IFIT1P09914 478 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 SLFNL1Q499Z3 407 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 ATG9AQ7Z3C6 839 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 XAGE2Q96GT9 111 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 IDH1O75874 414 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 SDSP20132 328 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 BCAMP50895 628 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 CWC27Q6UX04 472 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 TBC1D9Q6ZT07 1266 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 ECHDC1Q9NTX5 307 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 CDHR2Q9BYE9 1310 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 UFL1O94874 794 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 CHGBP05060 677 aa10.41□□□□□ -0.74
LIMCH1-209ENST00000509277 ERC2O15083 957 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 GSPT1P15170 499 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 MTX1Q13505 466 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 WASHC4Q2M389 1173 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 CERS3Q8IU89 383 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 STK11IPQ8N1F8 1099 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 RBM17Q96I25 401 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 C22orf23Q9BZE7 217 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 DIAPH3Q9NSV4 1193 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 CSF1RP07333 972 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 TM4SF1P30408 202 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 GBP4Q96PP9 640 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 BCS1LQ9Y276 419 aa10.4□□□□□ -0.74
LIMCH1-209ENST00000509277 C21orf2O43822 256 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 SLC5A1P13866 664 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 KLRK1P26718 216 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 PHKA1P46020 1223 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 TTC22Q5TAA0 569 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 TAF1P21675 1872 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 F8W031 263 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 MCTP1Q6DN14 999 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 CASC1Q6TDU7 716 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 ANO2Q9NQ90 1003 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 AKAP2Q9Y2D5 859 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 PDE8BO95263 885 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 HMGB2P26583 209 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 DOK7Q18PE1 504 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 ZSCAN30Q86W11 494 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 CCDC125Q86Z20 511 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 ZNF830Q96NB3 372 aaPredicted RBP10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 MINPP1Q9UNW1 487 aa10.39□□□□□ -0.75
LIMCH1-209ENST00000509277 DDX11L8A8MPP1 907 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 SLC4A8Q2Y0W8 1093 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 TAOK2Q9UL54 1235 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 PDE6BP35913 854 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 ANTXR1Q9H6X2 564 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 GLRX3O76003 335 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 CNTROBQ8N137 903 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 RIPOR2Q9Y4F9 1068 aa10.38□□□□□ -0.75
LIMCH1-209ENST00000509277 PPEF1O14829 653 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 GRAPQ13588 217 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 SCARF1Q14162 830 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 PUM3Q15397 648 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 CAVIN4Q5BKX8 364 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 GRAPLQ8TC17 118 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 ZAP70P43403 619 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 PLA2G12BQ9BX93 195 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 LRP2BPQ9P2M1 347 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 DPEP1P16444 411 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 DPP8Q6V1X1 898 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 BRIP1Q9BX63 1249 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 RAI14Q9P0K7 980 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 PRDM4Q9UKN5 801 aa10.37□□□□□ -0.75
LIMCH1-209ENST00000509277 SF3B3Q15393 1217 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 TXNRD3Q86VQ6 643 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 C17orf53Q8N3J3 647 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 CHAMP1Q96JM3 812 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 TAF1LQ8IZX4 1826 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 ERICH4A6NGS2 130 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 CDC45O75419 566 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 APPP05067 770 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 CCDC102BQ68D86 513 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 TNPO1Q92973 898 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 ZBTB9Q96C00 473 aa10.36□□□□□ -0.75
LIMCH1-209ENST00000509277 GPSM2P81274 684 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 PRPF40BQ6NWY9 871 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 CCDC129Q6ZRS4 1044 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 DBNDD1Q9H9R9 158 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 LY75O60449 1722 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 ZC3H12CQ9C0D7 883 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 GGA1Q9UJY5 639 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 MROH5Q6ZUA9 1318 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 SRGNP10124 158 aa10.35□□□□□ -0.75
LIMCH1-209ENST00000509277 LPIN2Q92539 896 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms