RNA–Protein interactions for RNA: ENST00000504181.1

LSM6-204, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM6, Length 549 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-204ENST00000504181 EIF4G2P78344 907 aaKnown RBP eCLIP16.62■□□□□ 0.25
LSM6-204ENST00000504181 LRP10Q7Z4F1 713 aa16.62■□□□□ 0.25
LSM6-204ENST00000504181 SH3TC2Q8TF17 1288 aa16.62■□□□□ 0.25
LSM6-204ENST00000504181 CLMNQ96JQ2 1002 aa16.62■□□□□ 0.25
LSM6-204ENST00000504181 ERBB4Q15303 1308 aa16.62■□□□□ 0.25
LSM6-204ENST00000504181 WNT10BO00744 389 aa16.61■□□□□ 0.25
LSM6-204ENST00000504181 HTATSF1O43719 755 aaKnown RBP16.61■□□□□ 0.25
LSM6-204ENST00000504181 HSP90AB3PQ58FF7 597 aa16.61■□□□□ 0.25
LSM6-204ENST00000504181 SASH1O94885 1247 aa16.6■□□□□ 0.25
LSM6-204ENST00000504181 PROSER3Q2NL68 480 aa16.6■□□□□ 0.25
LSM6-204ENST00000504181 OTUD7BQ6GQQ9 843 aa16.6■□□□□ 0.25
LSM6-204ENST00000504181 PNISRQ8TF01 805 aaKnown RBP16.6■□□□□ 0.25
LSM6-204ENST00000504181 SHISA4Q96DD7 197 aa16.6■□□□□ 0.25
LSM6-204ENST00000504181 USP17L3A6NCW0 530 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 USP17L4A6NCW7 530 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 AIMP1Q12904 312 aaKnown RBP16.59■□□□□ 0.25
LSM6-204ENST00000504181 PDIA6Q15084 440 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 USP17L1Q7RTZ2 530 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 PODXL2Q9NZ53 605 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 ANKIB1Q9P2G1 1089 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 GGA1Q9UJY5 639 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 SSC5DA1L4H1 1573 aa16.59■□□□□ 0.25
LSM6-204ENST00000504181 EIF2S2P20042 333 aaKnown RBP16.58■□□□□ 0.24
LSM6-204ENST00000504181 SF3B3Q15393 1217 aaKnown RBP16.58■□□□□ 0.24
LSM6-204ENST00000504181 MXD3Q9BW11 206 aa16.58■□□□□ 0.24
LSM6-204ENST00000504181 A0A1W2PPC1 479 aa16.57■□□□□ 0.24
LSM6-204ENST00000504181 RPS8P62241 208 aaKnown RBP16.57■□□□□ 0.24
LSM6-204ENST00000504181 ARHGEF6Q15052 776 aa16.57■□□□□ 0.24
LSM6-204ENST00000504181 APOBEC3FQ8IUX4 373 aaKnown RBP16.57■□□□□ 0.24
LSM6-204ENST00000504181 PTPN18Q99952 460 aa16.57■□□□□ 0.24
LSM6-204ENST00000504181 HTATIP2Q9BUP3 242 aa16.57■□□□□ 0.24
LSM6-204ENST00000504181 MGAMO43451 1857 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 COL1A1P02452 1464 aaPredicted RBP16.56■□□□□ 0.24
LSM6-204ENST00000504181 ZBTB7BO15156 539 aaPredicted RBP16.56■□□□□ 0.24
LSM6-204ENST00000504181 U2AF1L5P0DN76 240 aaPredicted RBP16.56■□□□□ 0.24
LSM6-204ENST00000504181 GJA5P36382 358 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 U2AF1Q01081 240 aaKnown RBP eCLIP16.56■□□□□ 0.24
LSM6-204ENST00000504181 COPS6Q7L5N1 327 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 OGFOD1Q8N543 542 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 FAM89AQ96GI7 184 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 NR2E3Q9Y5X4 410 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 MYH3P11055 1940 aa16.56■□□□□ 0.24
LSM6-204ENST00000504181 VCANP13611 3396 aa16.55■□□□□ 0.24
LSM6-204ENST00000504181 PER1O15534 1290 aaPredicted RBP16.55■□□□□ 0.24
LSM6-204ENST00000504181 RTL5Q5HYW3 569 aaPredicted RBP16.55■□□□□ 0.24
LSM6-204ENST00000504181 DEFB123Q8N688 67 aa16.55■□□□□ 0.24
LSM6-204ENST00000504181 XAGE3Q8WTP9 111 aa16.55■□□□□ 0.24
LSM6-204ENST00000504181 FBXW7Q969H0 707 aa16.55■□□□□ 0.24
LSM6-204ENST00000504181 MTFR1Q15390 333 aa16.54■□□□□ 0.24
LSM6-204ENST00000504181 MAP3K11Q16584 847 aa16.54■□□□□ 0.24
LSM6-204ENST00000504181 Q7L0L9 218 aa16.54■□□□□ 0.24
LSM6-204ENST00000504181 PPP1R12BO60237 982 aaPredicted RBP16.53■□□□□ 0.24
LSM6-204ENST00000504181 TAF1CQ15572 869 aaPredicted RBP16.53■□□□□ 0.24
LSM6-204ENST00000504181 PODNQ7Z5L7 613 aa16.53■□□□□ 0.24
LSM6-204ENST00000504181 CFAP53Q96M91 514 aa16.53■□□□□ 0.24
LSM6-204ENST00000504181 SEC31BQ9NQW1 1179 aa16.53■□□□□ 0.24
LSM6-204ENST00000504181 NUDCQ9Y266 331 aa16.53■□□□□ 0.24
LSM6-204ENST00000504181 STXBP5LQ9Y2K9 1186 aa16.53■□□□□ 0.24
LSM6-204ENST00000504181 SPTBN5Q9NRC6 3674 aaKnown RBP16.53■□□□□ 0.24
LSM6-204ENST00000504181 TESPA1A2RU30 521 aaPredicted RBP16.52■□□□□ 0.24
LSM6-204ENST00000504181 DACT2Q5SW24 774 aa16.52■□□□□ 0.24
LSM6-204ENST00000504181 ARHGAP39Q9C0H5 1083 aa16.52■□□□□ 0.24
LSM6-204ENST00000504181 STAP2Q9UGK3 403 aa16.52■□□□□ 0.24
LSM6-204ENST00000504181 ANKRD13DQ6ZTN6 518 aa16.51■□□□□ 0.23
LSM6-204ENST00000504181 UBE2Q1Q7Z7E8 422 aa16.51■□□□□ 0.23
LSM6-204ENST00000504181 DEFB129Q9H1M3 183 aa16.51■□□□□ 0.23
LSM6-204ENST00000504181 ZFYVE28Q9HCC9 887 aa16.51■□□□□ 0.23
LSM6-204ENST00000504181 MYO3BQ8WXR4 1341 aa16.5■□□□□ 0.23
LSM6-204ENST00000504181 ECM2O94769 699 aaPredicted RBP16.5■□□□□ 0.23
LSM6-204ENST00000504181 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.5■□□□□ 0.23
LSM6-204ENST00000504181 EYSQ5T1H1 3165 aa16.5■□□□□ 0.23
LSM6-204ENST00000504181 XDHP47989 1333 aa16.49■□□□□ 0.23
LSM6-204ENST00000504181 ATP5J2-PTCD1G3V325 749 aa16.49■□□□□ 0.23
LSM6-204ENST00000504181 IRS4O14654 1257 aaPredicted RBP16.49■□□□□ 0.23
LSM6-204ENST00000504181 NKX2-3Q8TAU0 364 aa16.49■□□□□ 0.23
LSM6-204ENST00000504181 IREB2P48200 963 aaKnown RBP16.48■□□□□ 0.23
LSM6-204ENST00000504181 KIF22Q14807 665 aa16.48■□□□□ 0.23
LSM6-204ENST00000504181 GPR153Q6NV75 609 aa16.48■□□□□ 0.23
LSM6-204ENST00000504181 KIAA0825Q8IV33 1275 aa16.48■□□□□ 0.23
LSM6-204ENST00000504181 OPTNQ96CV9 577 aa16.48■□□□□ 0.23
LSM6-204ENST00000504181 ELP3Q9H9T3 547 aa16.48■□□□□ 0.23
LSM6-204ENST00000504181 ARAP2Q8WZ64 1704 aa16.48■□□□□ 0.23
LSM6-204ENST00000504181 UNCXA6NJT0 531 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 EVI5O60447 810 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 ATP2B4P23634 1241 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 GJA8P48165 433 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 BRI3BPQ8WY22 251 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 ZBED3Q96IU2 234 aaPredicted RBP16.47■□□□□ 0.23
LSM6-204ENST00000504181 MS4A4AQ96JQ5 239 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 MTMR10Q9NXD2 777 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 TSPYL4Q9UJ04 414 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 MED23Q9ULK4 1368 aa16.47■□□□□ 0.23
LSM6-204ENST00000504181 USP2O75604 605 aaPredicted RBP16.46■□□□□ 0.23
LSM6-204ENST00000504181 FARP2O94887 1054 aaPredicted RBP16.46■□□□□ 0.23
LSM6-204ENST00000504181 LACTBP83111 547 aaPredicted RBP16.46■□□□□ 0.23
LSM6-204ENST00000504181 NBPF12Q5TAG4 269 aaPredicted RBP16.46■□□□□ 0.23
LSM6-204ENST00000504181 STRIP1Q5VSL9 837 aa16.46■□□□□ 0.23
LSM6-204ENST00000504181 ANKRD13AQ8IZ07 590 aa16.46■□□□□ 0.23
LSM6-204ENST00000504181 ISCA1Q9BUE6 129 aa16.46■□□□□ 0.23
LSM6-204ENST00000504181 PRDM6Q9NQX0 595 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms