RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 ZSWIM4Q9H7M6 989 aa15.71■□□□□ 0.11
GPC1-209ENST00000495100 MRVI1Q9Y6F6 885 aa15.71■□□□□ 0.11
GPC1-209ENST00000495100 COBLO75128 1261 aa15.71■□□□□ 0.11
GPC1-209ENST00000495100 HSPD1P10809 573 aaKnown RBP15.71■□□□□ 0.11
GPC1-209ENST00000495100 U2AF2P26368 475 aaKnown RBP eCLIP15.71■□□□□ 0.11
GPC1-209ENST00000495100 TCHHQ07283 1943 aa15.71■□□□□ 0.11
GPC1-209ENST00000495100 DLG5Q8TDM6 1919 aa15.71■□□□□ 0.11
GPC1-209ENST00000495100 PDCL2Q8N4E4 241 aa15.71■□□□□ 0.1
GPC1-209ENST00000495100 KBTBD3Q8NAB2 608 aa15.71■□□□□ 0.1
GPC1-209ENST00000495100 OSBP2Q969R2 916 aa15.71■□□□□ 0.1
GPC1-209ENST00000495100 LRP2BPQ9P2M1 347 aa15.71■□□□□ 0.1
GPC1-209ENST00000495100 NBPF26B4DH59 902 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 UBE2Q2LH0YL09 131 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 NBPF14Q5TI25 921 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 NBPF10Q6P3W6 841 aaKnown RBP15.7■□□□□ 0.1
GPC1-209ENST00000495100 GPIHBP1Q8IV16 184 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 NBPF15Q8N660 670 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 CCDC112Q8NEF3 446 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 SLC26A6Q9BXS9 759 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 KNDC1Q76NI1 1749 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 KIF20BQ96Q89 1820 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 M0R2C6 588 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 ATP2B3Q16720 1220 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 GTF3C6Q969F1 213 aa15.7■□□□□ 0.1
GPC1-209ENST00000495100 ZNF396Q96N95 335 aaPredicted RBP15.7■□□□□ 0.1
GPC1-209ENST00000495100 SKILP12757 684 aa15.69■□□□□ 0.1
GPC1-209ENST00000495100 CFAP100Q494V2 611 aa15.69■□□□□ 0.1
GPC1-209ENST00000495100 CLEC17AQ6ZS10 378 aa15.69■□□□□ 0.1
GPC1-209ENST00000495100 CTDSPL2Q05D32 466 aa15.69■□□□□ 0.1
GPC1-209ENST00000495100 PDLIM2Q96JY6 352 aa15.69■□□□□ 0.1
GPC1-209ENST00000495100 EYA2O00167 538 aa15.69■□□□□ 0.1
GPC1-209ENST00000495100 PUS7LQ9H0K6 701 aaKnown RBP15.69■□□□□ 0.1
GPC1-209ENST00000495100 IFIT3O14879 490 aaKnown RBP15.68■□□□□ 0.1
GPC1-209ENST00000495100 SKIDA1Q1XH10 827 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 CPLX2Q6PUV4 134 aaKnown RBP15.68■□□□□ 0.1
GPC1-209ENST00000495100 CEP57L1Q8IYX8 460 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 STAMQ92783 540 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 RAI14Q9P0K7 980 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 RNF113AO15541 343 aaKnown RBP15.68■□□□□ 0.1
GPC1-209ENST00000495100 ATP5JP18859 108 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 NRKQ7Z2Y5 1582 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 PXDNQ92626 1479 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 CLIC4Q9Y696 253 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 AOX1Q06278 1338 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 FGAP02671 866 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 ZNF771Q7L3S4 317 aaPredicted RBP15.68■□□□□ 0.1
GPC1-209ENST00000495100 PLBD2Q8NHP8 589 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 CLIC6Q96NY7 704 aa15.68■□□□□ 0.1
GPC1-209ENST00000495100 DDX19AQ9NUU7 478 aaKnown RBP15.68■□□□□ 0.1
GPC1-209ENST00000495100 GPAA1O43292 621 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 HOXB7P09629 217 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 TRERF1Q96PN7 1200 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 NAPBQ9H115 298 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 IFNKQ9P0W0 207 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 HMG20BQ9P0W2 317 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 RIMBP3CA6NJZ7 1639 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 RIMBP3BA6NNM3 1639 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 RIMBP3Q9UFD9 1639 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 ITGA6P23229 1130 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 IL15P40933 162 aaPredicted RBP15.67■□□□□ 0.1
GPC1-209ENST00000495100 AKAP17AQ02040 695 aaKnown RBP15.67■□□□□ 0.1
GPC1-209ENST00000495100 ZNF827Q17R98 1081 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 ALG1Q9BT22 464 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 GREM2Q9H772 168 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 KCNJ14Q9UNX9 436 aa15.67■□□□□ 0.1
GPC1-209ENST00000495100 ZNF500O60304 480 aaPredicted RBP15.66■□□□□ 0.1
GPC1-209ENST00000495100 USP32Q8NFA0 1604 aa15.66■□□□□ 0.1
GPC1-209ENST00000495100 MAST3O60307 1309 aa15.66■□□□□ 0.1
GPC1-209ENST00000495100 ERICH4A6NGS2 130 aa15.66■□□□□ 0.1
GPC1-209ENST00000495100 NRDCO43847 1150 aa15.66■□□□□ 0.1
GPC1-209ENST00000495100 SLC3A2P08195 630 aaKnown RBP15.66■□□□□ 0.1
GPC1-209ENST00000495100 TMEM67Q5HYA8 995 aa15.66■□□□□ 0.1
GPC1-209ENST00000495100 CACTINQ8WUQ7 758 aaKnown RBP15.66■□□□□ 0.1
GPC1-209ENST00000495100 BTG4Q9NY30 223 aa15.66■□□□□ 0.1
GPC1-209ENST00000495100 RANBP6O60518 1105 aaKnown RBP15.65■□□□□ 0.1
GPC1-209ENST00000495100 METAP2P50579 478 aaKnown RBP eCLIP15.65■□□□□ 0.1
GPC1-209ENST00000495100 PIP4K2BP78356 416 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 HLFQ16534 295 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 ARMT1Q9H993 441 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 BAZ2BQ9UIF8 2168 aaKnown RBP15.65■□□□□ 0.1
GPC1-209ENST00000495100 CCDC69A6NI79 296 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 STX17P56962 302 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 MAGEB6Q8N7X4 407 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 EEF2KMTQ96G04 330 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 BCL2L12Q9HB09 334 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 PTPN14Q15678 1187 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 CCDC144BQ3MJ40 725 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 KCNF1Q9H3M0 494 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 RICTORQ6R327 1708 aa15.65■□□□□ 0.1
GPC1-209ENST00000495100 GOLGA8AA7E2F4 631 aa15.64■□□□□ 0.09
GPC1-209ENST00000495100 AFMP43652 599 aa15.64■□□□□ 0.09
GPC1-209ENST00000495100 NDUFA8P51970 172 aa15.64■□□□□ 0.09
GPC1-209ENST00000495100 TPM4P67936 248 aa15.64■□□□□ 0.09
GPC1-209ENST00000495100 HMGN5P82970 282 aaKnown RBP15.64■□□□□ 0.09
GPC1-209ENST00000495100 FAM182BQ5T319 152 aa15.64■□□□□ 0.09
GPC1-209ENST00000495100 NSUN7Q8NE18 718 aaKnown RBP15.64■□□□□ 0.09
GPC1-209ENST00000495100 GOLPH3LQ9H4A5 285 aa15.64■□□□□ 0.09
GPC1-209ENST00000495100 IRS4O14654 1257 aaPredicted RBP15.64■□□□□ 0.09
GPC1-209ENST00000495100 DHX8Q14562 1220 aaKnown RBP15.64■□□□□ 0.09
GPC1-209ENST00000495100 COPRSQ9NQ92 184 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms