RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, human

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3A3-208	ENST00000489537	FHDC1	Q9C0D6	1143 aa	Predicted RBP	7.74	□□□□□ -1.17
SF3A3-208	ENST00000489537	COPRS	Q9NQ92	184 aa		7.74	□□□□□ -1.17
SF3A3-208	ENST00000489537	EXOC6B	Q9Y2D4	811 aa		7.74	□□□□□ -1.17
SF3A3-208	ENST00000489537	PNPLA7	Q6ZV29	1317 aa		7.74	□□□□□ -1.17
SF3A3-208	ENST00000489537	LAMB4	A4D0S4	1761 aa		7.74	□□□□□ -1.17
SF3A3-208	ENST00000489537	PNMA6E	A0A0J9YXQ4	647 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	PTMS	P20962	102 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	IL6ST	P40189	918 aa	Predicted RBP	7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	PROSER3	Q2NL68	480 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	RABL6	Q3YEC7	729 aa	Predicted RBP	7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	LRP10	Q7Z4F1	713 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	MYD88	Q99836	296 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	GPR108	Q9NPR9	543 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	ECHDC1	Q9NTX5	307 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	STK32B	Q9NY57	414 aa		7.73	□□□□□ -1.17
SF3A3-208	ENST00000489537	LY75	O60449	1722 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537		H7C1W4	665 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	IGKV5-2	P06315	115 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	PDIA4	P13667	645 aa	Known RBP	7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	SDS	P20132	328 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	TCIRG1	Q13488	830 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	KIAA1211	Q6ZU35	1233 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	PIGB	Q92521	554 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	SYTL4	Q96C24	671 aa	Predicted RBP	7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	EVI5L	Q96CN4	794 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	SYT17	Q9BSW7	474 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	PLA2G12B	Q9BX93	195 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	AKAP2	Q9Y2D5	859 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	RAD50	Q92878	1312 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	SALL3	Q9BXA9	1300 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	KCP	Q6ZWJ8	1503 aa		7.72	□□□□□ -1.17
SF3A3-208	ENST00000489537	APBB1	O00213	710 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	PTCD1	O75127	700 aa	Known RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	CIAO1	O76071	339 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	PCCA	P05165	728 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	GSPT1	P15170	499 aa	Known RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	IL15	P40933	162 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	MLLT3	P42568	568 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	CWF19L2	Q2TBE0	894 aa	Known RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	PARP10	Q53GL7	1025 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	GIGYF2	Q6Y7W6	1299 aa	Known RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	SKAP1	Q86WV1	359 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	COL23A1	Q86Y22	540 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	TTC13	Q8NBP0	860 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	IL21	Q9HBE4	155 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	NPDC1	Q9NQX5	325 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	PPP1R1B	Q9UD71	204 aa	Predicted RBP	7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	ZNF652	Q9Y2D9	606 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	COL24A1	Q17RW2	1714 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	MAP3K15	Q6ZN16	1313 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	CDHR2	Q9BYE9	1310 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	UBR2	Q8IWV8	1755 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	RFX7	Q2KHR2	1363 aa		7.71	□□□□□ -1.18
SF3A3-208	ENST00000489537	PRAMEF22	A3QJZ6	481 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	ANXA1	P04083	346 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	HSP90AA1	P07900	732 aa	Known RBP	7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	UBE3B	Q7Z3V4	1068 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	NLGN2	Q8NFZ4	835 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	CHMP4C	Q96CF2	233 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	SUCLG2	Q96I99	432 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	ISCA1	Q9BUE6	129 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	PRR14	Q9BWN1	585 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	MTFR1L	Q9H019	292 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	BICC1	Q9H694	974 aa	Known RBP	7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	DIAPH3	Q9NSV4	1193 aa		7.7	□□□□□ -1.18
SF3A3-208	ENST00000489537	ITGB4	P16144	1822 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	CYP19A1	P11511	503 aa	Predicted RBP	7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	YY1	P25490	414 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	CCDC57	Q2TAC2	916 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	SWT1	Q5T5J6	900 aa	Known RBP	7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	MSL1	Q68DK7	614 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	NBPF10	Q6P3W6	841 aa	Known RBP	7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	CLEC4G	Q6UXB4	293 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	AACS	Q86V21	672 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	NBPF15	Q8N660	670 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	RBM46	Q8TBY0	533 aa	Known RBP	7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	RILPL2	Q969X0	211 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	SLC4A9	Q96Q91	983 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	ARX	Q96QS3	562 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	USP26	Q9BXU7	913 aa		7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	CWC22	Q9HCG8	908 aa	Known RBP	7.69	□□□□□ -1.18
SF3A3-208	ENST00000489537	C3orf80	F5H4A9	247 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	SMARCA5	O60264	1052 aa	Predicted RBP	7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	CHML	P26374	656 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	TJAP1	Q5JTD0	557 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	RNF20	Q5VTR2	975 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	DNAJC10	Q8IXB1	793 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	IL17RA	Q96F46	866 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	MTR	Q99707	1265 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	ESYT1	Q9BSJ8	1104 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	CCDC87	Q9NVE4	849 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	CHMP5	Q9NZZ3	219 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	CEP126	Q9P2H0	1117 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	CCNL1	Q9UK58	526 aa	Predicted RBP	7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	ASAP1	Q9ULH1	1129 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	QSER1	Q2KHR3	1735 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	ABCC12	Q96J65	1359 aa		7.68	□□□□□ -1.18
SF3A3-208	ENST00000489537	TAF1L	Q8IZX4	1826 aa		7.67	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms