RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 NRKQ7Z2Y5 1582 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 ITSN1Q15811 1721 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 MAP2K3P46734 347 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 GNASQ5JWF2 1037 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 XAGE2Q96GT9 111 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 CFHR5Q9BXR6 569 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 RRAGCQ9HB90 399 aa9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 POLR3AO14802 1390 aaPredicted RBP9.37□□□□□ -0.91
TMEM39A-209ENST00000486235 ARHGEF28Q8N1W1 1705 aaKnown RBP9.36□□□□□ -0.91
TMEM39A-209ENST00000486235 A0A1B0GTH6 734 aa9.36□□□□□ -0.91
TMEM39A-209ENST00000486235 GTF2E1P29083 439 aaPredicted RBP9.36□□□□□ -0.91
TMEM39A-209ENST00000486235 C4orf17Q53FE4 359 aa9.36□□□□□ -0.91
TMEM39A-209ENST00000486235 CPDO75976 1380 aa9.36□□□□□ -0.91
TMEM39A-209ENST00000486235 NINLQ9Y2I6 1382 aa9.36□□□□□ -0.91
TMEM39A-209ENST00000486235 USP19O94966 1318 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 COL5A2P05997 1499 aaPredicted RBP9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 GCP02774 474 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 CSB-PGBD3P0DP91 1061 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 MSX1P28360 303 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 PTF1AQ7RTS3 328 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 PGBD3Q8N328 593 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 FHDC1Q9C0D6 1143 aaPredicted RBP9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 LRRC4BQ9NT99 713 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 PHF24Q9UPV7 400 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 THRAP3Q9Y2W1 955 aaKnown RBP9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 HRH3Q9Y5N1 445 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 LMO7Q8WWI1 1683 aa9.35□□□□□ -0.91
TMEM39A-209ENST00000486235 OVOS2A0A0G2JMS6 1433 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 OVOS2A0A0J9YW53 1432 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 OVOS2Q6IE36 1432 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 ADAM23O75077 832 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 ZBTB7AO95365 584 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 PROCP04070 461 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 BRPF1P55201 1214 aaPredicted RBP9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 NLRP13Q86W25 1043 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 PDGFDQ9GZP0 370 aaPredicted RBP9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 TOPAZ1Q8N9V7 1692 aa9.34□□□□□ -0.91
TMEM39A-209ENST00000486235 CRB1P82279 1406 aa9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 SRPK2P78362 688 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 UBAP2LQ14157 1087 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 DDB1Q16531 1140 aa9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 TOM1L2Q6ZVM7 507 aa9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 EDARADDQ8WWZ3 215 aa9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 ABHD17AQ96GS6 310 aa9.33□□□□□ -0.92
TMEM39A-209ENST00000486235 PPIP5K1Q6PFW1 1433 aa9.32□□□□□ -0.92
TMEM39A-209ENST00000486235 PARP4Q9UKK3 1724 aaKnown RBP9.32□□□□□ -0.92
TMEM39A-209ENST00000486235 KRBA1A5PL33 1030 aa9.32□□□□□ -0.92
TMEM39A-209ENST00000486235 C2CD2LO14523 706 aa9.32□□□□□ -0.92
TMEM39A-209ENST00000486235 TBC1D2BQ9UPU7 963 aa9.32□□□□□ -0.92
TMEM39A-209ENST00000486235 PLSCR1O15162 318 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 BMP4P12644 408 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 AMPD1P23109 780 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 CTBSQ01459 385 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 NBPF1Q3BBV0 1214 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 OXLD1Q5BKU9 147 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 ETNK1Q9HBU6 452 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 MKL2Q9ULH7 1088 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 DOLKQ9UPQ8 538 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 PEAK1Q9H792 1746 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 LRRC37A3O60309 1634 aa9.31□□□□□ -0.92
TMEM39A-209ENST00000486235 APBB1O00213 710 aa9.3□□□□□ -0.92
TMEM39A-209ENST00000486235 COL8A1P27658 744 aa9.3□□□□□ -0.92
TMEM39A-209ENST00000486235 TLR1Q15399 786 aa9.3□□□□□ -0.92
TMEM39A-209ENST00000486235 EFHC2Q5JST6 749 aa9.3□□□□□ -0.92
TMEM39A-209ENST00000486235 MARCH10Q8NA82 808 aaPredicted RBP9.3□□□□□ -0.92
TMEM39A-209ENST00000486235 AATKQ6ZMQ8 1374 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 BNIP3LO60238 219 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 USP4Q13107 963 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 SLFNL1Q499Z3 407 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 STK32BQ9NY57 414 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 CABP1Q9NZU7 370 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 GGA1Q9UJY5 639 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 GDF2Q9UK05 429 aaPredicted RBP9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 CASZ1Q86V15 1759 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 USP6P35125 1406 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 MYOM1P52179 1685 aa9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 CENPJQ9HC77 1338 aaPredicted RBP9.29□□□□□ -0.92
TMEM39A-209ENST00000486235 SLIT3O75094 1523 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 FGFR3P22607 806 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 PLA2G4AP47712 749 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 GRIN2CQ14957 1233 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 TXNRD1Q16881 649 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 RNF135Q8IUD6 432 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 PHTF2Q8N3S3 785 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 GOLGA6L1Q8N7Z2 621 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 RHBDD1Q8TEB9 315 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 SUV39H2Q9H5I1 410 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 ATXN7L1Q9ULK2 861 aaPredicted RBP9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 WDR17Q8IZU2 1322 aa9.28□□□□□ -0.92
TMEM39A-209ENST00000486235 RGPD3A6NKT7 1758 aaPredicted RBP9.27□□□□□ -0.92
TMEM39A-209ENST00000486235 RGPD4Q7Z3J3 1758 aa9.27□□□□□ -0.92
TMEM39A-209ENST00000486235 SBF2Q86WG5 1849 aa9.27□□□□□ -0.93
TMEM39A-209ENST00000486235 EIF4G2P78344 907 aaKnown RBP eCLIP9.27□□□□□ -0.93
TMEM39A-209ENST00000486235 LBRQ14739 615 aaKnown RBP9.27□□□□□ -0.93
TMEM39A-209ENST00000486235 SLC15A2Q16348 729 aa9.27□□□□□ -0.93
TMEM39A-209ENST00000486235 XP32Q5T750 250 aa9.27□□□□□ -0.93
TMEM39A-209ENST00000486235 SYT17Q9BSW7 474 aa9.27□□□□□ -0.93
TMEM39A-209ENST00000486235 BRD4O60885 1362 aaPredicted RBP9.26□□□□□ -0.93
TMEM39A-209ENST00000486235 CPSF1Q10570 1443 aaKnown RBP9.26□□□□□ -0.93
TMEM39A-209ENST00000486235 AIDAQ96BJ3 306 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms