RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HLA-DOAP06340 250 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 RUFY3Q7L099 469 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 KIF18AQ8NI77 898 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 JDP2Q8WYK2 163 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 PPP1R9BQ96SB3 815 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 FEZ1Q99689 392 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 E9PCH4 1651 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 F13A1P00488 732 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 TTLL7Q6ZT98 887 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 ZSCAN16Q9H4T2 348 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-228ENST00000486227 AOX1Q06278 1338 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 SMTNL1A8MU46 457 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 APOBRQ0VD83 1088 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 GIMAP6Q6P9H5 292 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 PPFIBP1Q86W92 1011 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 CABP5Q9NP86 173 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 GSTO1P78417 241 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 MAGEB6Q8N7X4 407 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 SMARCE1Q969G3 411 aa12.73□□□□□ -0.37
HDAC6-228ENST00000486227 C16orf45Q96MC5 204 aaPredicted RBP12.73□□□□□ -0.37
HDAC6-228ENST00000486227 MADDQ8WXG6 1647 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 BIN1O00499 593 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 CCDC96Q2M329 555 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 CFAP100Q494V2 611 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 DHX32Q7L7V1 743 aaKnown RBP12.72□□□□□ -0.37
HDAC6-228ENST00000486227 ERCC4Q92889 916 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-228ENST00000486227 INTS4Q96HW7 963 aaKnown RBP12.72□□□□□ -0.37
HDAC6-228ENST00000486227 RBSNQ9H1K0 784 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 STX8Q9UNK0 236 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 CDK12Q9NYV4 1490 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-228ENST00000486227 NEMFO60524 1076 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 KRT23Q9C075 422 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 NSFL1CQ9UNZ2 370 aaKnown RBP12.72□□□□□ -0.37
HDAC6-228ENST00000486227 GLI2P10070 1586 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 PRAMEF22A3QJZ6 481 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 KLHL10Q6JEL2 608 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 UBXN4Q92575 508 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 ESR2Q92731 530 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 EDC3Q96F86 508 aaKnown RBP12.72□□□□□ -0.37
HDAC6-228ENST00000486227 ALG1Q9BT22 464 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 ALKQ9UM73 1620 aa12.72□□□□□ -0.37
HDAC6-228ENST00000486227 CTAGE5O15320 804 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 CBFA2T2O43439 604 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 XAGE2Q96GT9 111 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 VAT1LQ9HCJ6 419 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 PAXBP1Q9Y5B6 917 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 SNX14Q9Y5W7 946 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 CCDC194A0A1B0GVG4 234 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 ANTXR1Q9H6X2 564 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 WWC3Q9ULE0 1092 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 CNNM3Q8NE01 707 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 ZNF830Q96NB3 372 aaPredicted RBP12.71□□□□□ -0.37
HDAC6-228ENST00000486227 KAT14Q9H8E8 782 aa12.71□□□□□ -0.37
HDAC6-228ENST00000486227 ADGRB3O60242 1522 aa12.71□□□□□ -0.38
HDAC6-228ENST00000486227 ERBB3P21860 1342 aa12.71□□□□□ -0.38
HDAC6-228ENST00000486227 PDE8AO60658 829 aa12.71□□□□□ -0.38
HDAC6-228ENST00000486227 TMCO3Q6UWJ1 677 aa12.71□□□□□ -0.38
HDAC6-228ENST00000486227 EAF2Q96CJ1 260 aaPredicted RBP12.71□□□□□ -0.38
HDAC6-228ENST00000486227 CNNM2Q9H8M5 875 aa12.71□□□□□ -0.38
HDAC6-228ENST00000486227 JAG2Q9Y219 1238 aa12.71□□□□□ -0.38
HDAC6-228ENST00000486227 DTNBO60941 627 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 APBA3O96018 575 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 TCIRG1Q13488 830 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 BMP2KQ9NSY1 1161 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-228ENST00000486227 CLEC11AQ9Y240 323 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.7□□□□□ -0.38
HDAC6-228ENST00000486227 SLC27A2O14975 620 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 KIF20AO95235 890 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 SYT1P21579 422 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 KIF5BP33176 963 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 CT47A1Q5JQC4 288 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-228ENST00000486227 FAM177A1Q8N128 213 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-228ENST00000486227 EYA3Q99504 573 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 TTC12Q9H892 705 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-228ENST00000486227 CCDC87Q9NVE4 849 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.7□□□□□ -0.382e-6■■□□□ 12.9
HDAC6-228ENST00000486227 ZNF165P49910 485 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 PARP10Q53GL7 1025 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 ZNF804AQ7Z570 1209 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 CNBD1Q8NA66 436 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 KDRP35968 1356 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 MAGEB6P1A0A0J9YX57 407 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 F8W031 263 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-228ENST00000486227 RTN1Q16799 776 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 KBTBD3Q8NAB2 608 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 HELLSQ9NRZ9 838 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 CLIP2Q9UDT6 1046 aa12.7□□□□□ -0.38
HDAC6-228ENST00000486227 ZNF500O60304 480 aaPredicted RBP12.69□□□□□ -0.38
HDAC6-228ENST00000486227 KRT222Q8N1A0 295 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 TMTC2Q8N394 836 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 ABCA6Q8N139 1617 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 TAF5LO75529 589 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 TNIP1Q15025 636 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 IFIT1BQ5T764 474 aaKnown RBP12.69□□□□□ -0.38
HDAC6-228ENST00000486227 ISM2Q6H9L7 571 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 ZNHIT6Q9NWK9 470 aaKnown RBP12.69□□□□□ -0.38
HDAC6-228ENST00000486227 MBD4O95243 580 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 MYRIPQ8NFW9 859 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 TANGO6Q9C0B7 1094 aa12.69□□□□□ -0.38
HDAC6-228ENST00000486227 CEP152O94986 1710 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms