RNA–Protein interactions for RNA: ENST00000481173.1

CCNL1-223, Transcript of cyclin L1, human

TSL 2

Gene CCNL1, Length 571 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-223	ENST00000481173	FAM46A	Q96IP4	442 aa	Known RBP	7.17	□□□□□ -1.26
CCNL1-223	ENST00000481173	ADAM11	O75078	769 aa		7.16	□□□□□ -1.26
CCNL1-223	ENST00000481173	FAM69C	Q0P6D2	419 aa		7.16	□□□□□ -1.26
CCNL1-223	ENST00000481173	KLHDC7B	Q96G42	594 aa		7.16	□□□□□ -1.26
CCNL1-223	ENST00000481173	FAM13B	Q9NYF5	915 aa		7.16	□□□□□ -1.26
CCNL1-223	ENST00000481173	ZBTB39	O15060	712 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	SPINK2	P20155	84 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	TXK	P42681	527 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	UVSSA	Q2YD98	709 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	RNF43	Q68DV7	783 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	FAM117B	Q6P1L5	589 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	NCAPG2	Q86XI2	1143 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	MYRFL	Q96LU7	910 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	PBX4	Q9BYU1	374 aa		7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	ABI2	Q9NYB9	513 aa	Predicted RBP	7.15	□□□□□ -1.26
CCNL1-223	ENST00000481173	PRR19	A6NJB7	356 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	KIF4A	O95239	1232 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	GRIK1	P39086	918 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	KLHL23	Q8NBE8	558 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	FMNL2	Q96PY5	1086 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	POP1	Q99575	1024 aa	Known RBP	7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	DBNDD2	Q9BQY9	259 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	SEC31B	Q9NQW1	1179 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	KANSL3	Q9P2N6	904 aa		7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	FNDC3A	Q9Y2H6	1198 aa	Known RBP	7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	7.14	□□□□□ -1.27
CCNL1-223	ENST00000481173	PTPRA	P18433	802 aa		7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	FAM20C	Q8IXL6	584 aa		7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	CEP120	Q8N960	986 aa		7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	SHKBP1	Q8TBC3	707 aa		7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	COL26A1	Q96A83	441 aa		7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	KCNF1	Q9H3M0	494 aa		7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	CXXC1	Q9P0U4	656 aa	Predicted RBP	7.13	□□□□□ -1.27
CCNL1-223	ENST00000481173	KRTAP4-8	A0A0G2JLE6	195 aa		7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	SART1	O43290	800 aa	Known RBP	7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	BMP3	P12645	472 aa		7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	ACPP	P15309	386 aa		7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	PREP	P48147	710 aa		7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	INTS5	Q6P9B9	1019 aa	Known RBP	7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	TMEM63C	Q9P1W3	806 aa		7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	STIM2	Q9P246	746 aa		7.12	□□□□□ -1.27
CCNL1-223	ENST00000481173	FAM177B	A6PVY3	158 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	NLRP12	P59046	1061 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	BEND4	Q6ZU67	534 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	DTX1	Q86Y01	620 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	CLEC10A	Q8IUN9	316 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	FAM83C	Q9BQN1	747 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	ZMYND15	Q9H091	742 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	CNTN3	Q9P232	1028 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173	RNF114	Q9Y508	228 aa		7.11	□□□□□ -1.27
CCNL1-223	ENST00000481173		H3BRJ5	948 aa		7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	TRPA1	O75762	1119 aa		7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	ELOA	Q14241	798 aa	Known RBP	7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	SLC7A3	Q8WY07	619 aa		7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	ADAM19	Q9H013	955 aa		7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	ELP3	Q9H9T3	547 aa		7.1	□□□□□ -1.27
CCNL1-223	ENST00000481173	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	WDR64	B1ANS9	1081 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	WNT11	O96014	354 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	TMEM164	Q5U3C3	297 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	ZNF438	Q7Z4V0	828 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	ATCAY	Q86WG3	371 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	ABTB2	Q8N961	1025 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	NUDT16	Q96DE0	195 aa	Known RBP	7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	HHIP	Q96QV1	700 aa		7.09	□□□□□ -1.27
CCNL1-223	ENST00000481173	HOXA10	P31260	410 aa	Predicted RBP	7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	CABP4	P57796	275 aa		7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	PIP4K2B	P78356	416 aa		7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	HGSNAT	Q68CP4	663 aa		7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	ANKRD34A	Q69YU3	496 aa		7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	RUSC1	Q9BVN2	902 aa		7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	RNF208	Q9H0X6	261 aa		7.08	□□□□□ -1.28
CCNL1-223	ENST00000481173	YBX3	P16989	372 aa	Known RBP eCLIP	7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173	PDE12	Q6L8Q7	609 aa	Known RBP	7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173	FDX2	Q6P4F2	183 aa		7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173	C1orf127	Q8N9H9	656 aa		7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173	MFSD14A	Q96MC6	490 aa		7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173	SEPT3	Q9UH03	358 aa		7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173	SALL4	Q9UJQ4	1053 aa		7.07	□□□□□ -1.28
CCNL1-223	ENST00000481173		A6NHS1	94 aa		7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	NFKBIE	O00221	500 aa		7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	GAS2	O43903	313 aa	Known RBP	7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	CES1	P23141	567 aa		7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	WNT8B	Q93098	351 aa		7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	OSGEP	Q9NPF4	335 aa		7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	SLAIN2	Q9P270	581 aa		7.06	□□□□□ -1.28
CCNL1-223	ENST00000481173	PDE2A	O00408	941 aa	Predicted RBP	7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	MAP4	P27816	1152 aa	Known RBP	7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	SRPK2	P78362	688 aa	Known RBP	7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	SGO2	Q562F6	1265 aa		7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	FBXL6	Q8N531	539 aa		7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	DZANK1	Q9NVP4	752 aa		7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	ADGRE2	Q9UHX3	823 aa		7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	HIF3A	Q9Y2N7	669 aa		7.05	□□□□□ -1.28
CCNL1-223	ENST00000481173	RXRB	P28702	533 aa		7.04	□□□□□ -1.28
CCNL1-223	ENST00000481173	EDEM1	Q92611	657 aa		7.04	□□□□□ -1.28
CCNL1-223	ENST00000481173	CLP1	Q92989	425 aa	Known RBP	7.04	□□□□□ -1.28
CCNL1-223	ENST00000481173	PIM2	Q9P1W9	311 aa		7.04	□□□□□ -1.28
CCNL1-223	ENST00000481173	ATG7	O95352	703 aa		7.03	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms