RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KIF4BQ2VIQ3 1234 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 DACT2Q5SW24 774 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 DCAF8Q5TAQ9 597 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 CDC37L1Q7L3B6 337 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 USP48Q86UV5 1035 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 AGBL3Q8NEM8 1001 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 SUCLG2Q96I99 432 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 SRCIN1Q9C0H9 1055 aa17.9■□□□□ 0.46
UPF3A-204ENST00000475218 USP17L3A6NCW0 530 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 USP17L4A6NCW7 530 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 FOXN1O15353 648 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 USP17L1Q7RTZ2 530 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 SAPCD2Q86UD0 394 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 ZNF594Q96JF6 807 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-204ENST00000475218 MPHOSPH8Q99549 860 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 ADM5C9JUS6 153 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 TAF5LO75529 589 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 IFIT5Q13325 482 aaKnown RBP17.89■□□□□ 0.45
UPF3A-204ENST00000475218 CYP4F22Q6NT55 531 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 HELBQ8NG08 1087 aaPredicted RBP17.89■□□□□ 0.45
UPF3A-204ENST00000475218 ANKRD2Q9GZV1 360 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 WBP1LQ9NX94 342 aa17.89■□□□□ 0.45
UPF3A-204ENST00000475218 COA1Q9GZY4 146 aa17.88■□□□□ 0.45
UPF3A-204ENST00000475218 KRT26Q7Z3Y9 468 aa17.87■□□□□ 0.45
UPF3A-204ENST00000475218 CAPNS2Q96L46 248 aa17.87■□□□□ 0.45
UPF3A-204ENST00000475218 GGA3Q9NZ52 723 aa17.87■□□□□ 0.45
UPF3A-204ENST00000475218 C9orf78Q9NZ63 289 aaPredicted RBP17.87■□□□□ 0.45
UPF3A-204ENST00000475218 ZNF408Q9H9D4 720 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 CHMP3Q9Y3E7 222 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 PTPRCP08575 1304 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 USP17L8P0C7I0 530 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 C15orf52Q6ZUT6 534 aaKnown RBP17.86■□□□□ 0.45
UPF3A-204ENST00000475218 ANKRD44Q8N8A2 993 aa17.86■□□□□ 0.45
UPF3A-204ENST00000475218 STRIP1Q5VSL9 837 aa17.85■□□□□ 0.45
UPF3A-204ENST00000475218 MYOZ2Q9NPC6 264 aa17.85■□□□□ 0.45
UPF3A-204ENST00000475218 AOC2O75106 756 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 SCARF1Q14162 830 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 RABL6Q3YEC7 729 aaPredicted RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 PUS3Q9BZE2 481 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 BICC1Q9H694 974 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 CD209Q9NNX6 404 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 CCDC57Q2TAC2 916 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 ALDH1L2Q3SY69 923 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 ANGEL2Q5VTE6 544 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 DCPSQ96C86 337 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 HHIPL1Q96JK4 782 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 USP44Q9H0E7 712 aa17.84■□□□□ 0.45
UPF3A-204ENST00000475218 SCAF8Q9UPN6 1271 aaKnown RBP17.84■□□□□ 0.45
UPF3A-204ENST00000475218 LDHAL6AQ6ZMR3 332 aa17.83■□□□□ 0.44
UPF3A-204ENST00000475218 CERS5Q8N5B7 392 aa17.83■□□□□ 0.44
UPF3A-204ENST00000475218 GTF2IP78347 998 aa17.82■□□□□ 0.44
UPF3A-204ENST00000475218 NBPF9Q3BBW0 867 aa17.82■□□□□ 0.44
UPF3A-204ENST00000475218 TTLL5Q6EMB2 1281 aa17.82■□□□□ 0.44
UPF3A-204ENST00000475218 KCNJ4P48050 445 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 GRM1Q13255 1194 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 PAXIP1Q6ZW49 1069 aaPredicted RBP17.81■□□□□ 0.44
UPF3A-204ENST00000475218 FBXW7Q969H0 707 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 RIPOR2Q9Y4F9 1068 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 ECE1P42892 770 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 CDCA5Q96FF9 252 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 ZIC5Q96T25 663 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 SMC4Q9NTJ3 1288 aa17.81■□□□□ 0.44
UPF3A-204ENST00000475218 WNT10BO00744 389 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 HSPA8P11142 646 aaKnown RBP17.8■□□□□ 0.44
UPF3A-204ENST00000475218 IL1R1P14778 569 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 SULF1Q8IWU6 871 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 ZBED3Q96IU2 234 aaPredicted RBP17.8■□□□□ 0.44
UPF3A-204ENST00000475218 CNNM1Q9NRU3 951 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 MYO3BQ8WXR4 1341 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 PITPNM2Q9BZ72 1349 aa17.8■□□□□ 0.44
UPF3A-204ENST00000475218 PLIN1O60240 522 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 HUNKP57058 714 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 TAF7LQ5H9L4 462 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 KIAA0825Q8IV33 1275 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 GBA2Q9HCG7 927 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 FAM155AB1AL88 458 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 CTCFP49711 727 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 LBX1P52954 281 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 MAP2K1Q02750 393 aaPredicted RBP17.79■□□□□ 0.44
UPF3A-204ENST00000475218 LRRC24Q50LG9 513 aa17.79■□□□□ 0.44
UPF3A-204ENST00000475218 SASH1O94885 1247 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 MAP2K2P36507 400 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 BRPF1P55201 1214 aaPredicted RBP17.78■□□□□ 0.44
UPF3A-204ENST00000475218 TNS4Q8IZW8 715 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 KLHDC4Q8TBB5 520 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 PRDM10Q9NQV6 1147 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 NOB1Q9ULX3 412 aaKnown RBP17.78■□□□□ 0.44
UPF3A-204ENST00000475218 PCDHAC2Q9Y5I4 1007 aa17.78■□□□□ 0.44
UPF3A-204ENST00000475218 CT47B1P0C2W7 299 aaPredicted RBP17.77■□□□□ 0.44
UPF3A-204ENST00000475218 PRAMEF18Q5VWM3 479 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 MIER1Q8N108 512 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 VGLL2Q8N8G2 317 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 AIDAQ96BJ3 306 aa17.77■□□□□ 0.44
UPF3A-204ENST00000475218 AOX1Q06278 1338 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 RFX5P48382 616 aaPredicted RBP17.76■□□□□ 0.43
UPF3A-204ENST00000475218 RARSP54136 660 aaKnown RBP17.76■□□□□ 0.43
UPF3A-204ENST00000475218 OGFOD1Q8N543 542 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 JAG2Q9Y219 1238 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 GYG1P46976 350 aa17.76■□□□□ 0.43
UPF3A-204ENST00000475218 UBE4AQ14139 1066 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms