RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 UBE3BQ7Z3V4 1068 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 CCDC150Q8NCX0 1101 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 EAF2Q96CJ1 260 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 RPS6KB1P23443 525 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 GUCY2CP25092 1073 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 U2AF2P26368 475 aaKnown RBP eCLIP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 DNM1Q05193 864 aaKnown RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 CCDC30Q5VVM6 783 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 ARMCX5Q6P1M9 558 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 COG3Q96JB2 828 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 NUTM2GQ5VZR2 741 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 ERC1Q8IUD2 1116 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 ZNF512BQ96KM6 892 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-220ENST00000471834 DSCC1Q9BVC3 393 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 PODXL2Q9NZ53 605 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 TNS2Q63HR2 1409 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 SEMA3EO15041 775 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 ISM2Q6H9L7 571 aa6.26□□□□□ -1.41
SYNE1-220ENST00000471834 NT5C2P49902 561 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 CDKAL1Q5VV42 579 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 JARID2Q92833 1246 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 GOLGA6L9A6NEM1 432 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 ARHGAP6O43182 974 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 CMA1P23946 247 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 RUFY2Q8WXA3 655 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 RUBCNQ92622 972 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 MAP2P11137 1827 aaKnown RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 NPM3O75607 178 aaKnown RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 SASH3O75995 380 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 BRD3Q15059 726 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 PPP1R42Q7Z4L9 355 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 YTHDF3Q7Z739 585 aaKnown RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 EIF1ADQ8N9N8 165 aaKnown RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 MYO1AQ9UBC5 1043 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 NBPF7P0C2Y1 421 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 SH3GL2Q99962 352 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 ANO2Q9NQ90 1003 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 MDM2Q00987 491 aaPredicted RBP6.25□□□□□ -1.41
SYNE1-220ENST00000471834 HSP90AB2PQ58FF8 381 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 TAF7LQ5H9L4 462 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 ARHGAP27Q6ZUM4 889 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 VSTM4Q8IW00 320 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 TRIM34Q9BYJ4 488 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 EXOC6BQ9Y2D4 811 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 UBAP1LF5GYI3 381 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 TPM1P09493 284 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 CREB3L3Q68CJ9 461 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 GPATCH3Q96I76 525 aa6.25□□□□□ -1.41
SYNE1-220ENST00000471834 ATP8B3O60423 1300 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 TRIML1Q8N9V2 468 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 FBXO18Q8NFZ0 1043 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 NECTIN2Q92692 538 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 DNAJC2Q99543 621 aaKnown RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 MYO5BQ9ULV0 1848 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 ZNF609O15014 1411 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 PXDNQ92626 1479 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 VWA3AA6NCI4 1184 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 HNRNPH3P31942 346 aaKnown RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 STAG1Q8WVM7 1258 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 CFAP65Q6ZU64 1925 aaKnown RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 USP27XA6NNY8 438 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 ERCC5P28715 1186 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 NAA30Q147X3 362 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 RNF214Q8ND24 703 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 RILPL2Q969X0 211 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 PURBQ96QR8 312 aaKnown RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 CYP46A1Q9Y6A2 500 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 ACEP12821 1306 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 C11orf57Q6ZUT1 292 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 FILIP1Q7Z7B0 1213 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 SRLQ86TD4 932 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 C17orf53Q8N3J3 647 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 GPR161Q8N6U8 529 aaKnown RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 CYP21A2P08686 494 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 TNNT1P13805 278 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 GJB2P29033 226 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 TAF7Q15545 349 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-220ENST00000471834 CDC37L1Q7L3B6 337 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 SGMS1Q86VZ5 419 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 KIAA1468Q9P260 1216 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 TAF6LQ9Y6J9 622 aa6.24□□□□□ -1.41
SYNE1-220ENST00000471834 TIAM2Q8IVF5 1701 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 FOSBP53539 338 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 SULT6B1Q6IMI4 303 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 MRFAP1Q9Y605 127 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 ITIH6Q6UXX5 1313 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 SLC27A2O14975 620 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 NRDCO43847 1150 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 IGKV5-2P06315 115 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 HMGB1P09429 215 aaKnown RBP6.23□□□□□ -1.41
SYNE1-220ENST00000471834 GORABQ5T7V8 394 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 NBPF14Q5TI25 921 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 DNAAF4Q8WXU2 420 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 SKILP12757 684 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 SLC39A14Q15043 492 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 STX1AQ16623 288 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 GIMAP6Q6P9H5 292 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 KSR2Q6VAB6 950 aa6.23□□□□□ -1.41
SYNE1-220ENST00000471834 ENOX1Q8TC92 643 aaKnown RBP6.23□□□□□ -1.41
SYNE1-220ENST00000471834 DDX21Q9NR30 783 aaKnown RBP eCLIP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms