RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 FGD5Q6ZNL6 1462 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 ADAMTS2O95450 1211 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 POLR3DP05423 398 aaPredicted RBP8.79□□□□□ -1
CKS1B-204ENST00000471245 EDN3P14138 238 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 CD33P20138 364 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 SOX18P35713 384 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 NEUROD1Q13562 356 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 NAALADL2Q58DX5 795 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 KIAA0319Q5VV43 1072 aa8.79□□□□□ -1
CKS1B-204ENST00000471245 SREK1Q8WXA9 508 aaKnown RBP8.79□□□□□ -1
CKS1B-204ENST00000471245 GDF2Q9UK05 429 aaPredicted RBP8.79□□□□□ -1
CKS1B-204ENST00000471245 ERCC6L2Q5T890 1561 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 USP31Q70CQ4 1352 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 PHF20L1A8MW92 1017 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 GADD45BO75293 160 aaPredicted RBP8.78□□□□□ -1
CKS1B-204ENST00000471245 SASH3O75995 380 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 USP17L7P0C7H9 530 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 HOXD8P13378 290 aaPredicted RBP8.78□□□□□ -1
CKS1B-204ENST00000471245 SPEM2Q0P670 501 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 SUZ12Q15022 739 aaKnown RBP8.78□□□□□ -1
CKS1B-204ENST00000471245 ZNF468Q5VIY5 522 aaPredicted RBP8.78□□□□□ -1
CKS1B-204ENST00000471245 C9orf131Q5VYM1 1079 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 BCO2Q9BYV7 579 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 TRAK1Q9UPV9 953 aa8.78□□□□□ -1
CKS1B-204ENST00000471245 MMP20O60882 483 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 MAP3K6O95382 1288 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 RARAP10276 462 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 PTPN12Q05209 780 aaKnown RBP8.77□□□□□ -1.01
CKS1B-204ENST00000471245 GRM2Q14416 872 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 GOLGA6L1Q8N7Z2 621 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 PNMA5Q96PV4 448 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 PRR12Q9ULL5 1215 aa8.77□□□□□ -1.01
CKS1B-204ENST00000471245 SIN3BO75182 1162 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 TARSP26639 723 aaKnown RBP8.76□□□□□ -1.01
CKS1B-204ENST00000471245 GSTT1P30711 240 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 SF3A1Q15459 793 aaKnown RBP8.76□□□□□ -1.01
CKS1B-204ENST00000471245 TAF1CQ15572 869 aaPredicted RBP8.76□□□□□ -1.01
CKS1B-204ENST00000471245 PRPF40BQ6NWY9 871 aaKnown RBP8.76□□□□□ -1.01
CKS1B-204ENST00000471245 NXPE4Q6UWF7 544 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 KRT25Q7Z3Z0 450 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 OXCT2Q9BYC2 517 aaPredicted RBP8.76□□□□□ -1.01
CKS1B-204ENST00000471245 CCSER2Q9H7U1 834 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 ZFATQ9P243 1243 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 SALL4Q9UJQ4 1053 aa8.76□□□□□ -1.01
CKS1B-204ENST00000471245 CUX1P39880 1505 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 KIF4AO95239 1232 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 CYP2E1P05181 493 aaPredicted RBP8.75□□□□□ -1.01
CKS1B-204ENST00000471245 NFKB1P19838 968 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 ADH6P28332 368 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 PEAR1Q5VY43 1037 aaPredicted RBP8.75□□□□□ -1.01
CKS1B-204ENST00000471245 HS2ST1Q7LGA3 356 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 DRC1Q96MC2 740 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 SLC30A3Q99726 388 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 TLR7Q9NYK1 1049 aaKnown RBP8.75□□□□□ -1.01
CKS1B-204ENST00000471245 KANSL3Q9P2N6 904 aa8.75□□□□□ -1.01
CKS1B-204ENST00000471245 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.75□□□□□ -1.01
CKS1B-204ENST00000471245 ABCA5Q8WWZ7 1642 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 A0A1W2PP55 124 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 PSAPP07602 524 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 LORP23490 312 aaPredicted RBP8.74□□□□□ -1.01
CKS1B-204ENST00000471245 GLIS3Q8NEA6 775 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 ANKRD24Q8TF21 1146 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 ACDQ96AP0 544 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 TINF2Q9BSI4 451 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 EHD4Q9H223 541 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 PPP4R2Q9NY27 417 aa8.74□□□□□ -1.01
CKS1B-204ENST00000471245 CEP170Q5SW79 1584 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 BCRP11274 1271 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 PLAURQ03405 335 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 HYAL2Q12891 473 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 MEI1Q5TIA1 1274 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 SLCO4C1Q6ZQN7 724 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 ZSCAN1Q8NBB4 408 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 TNFRSF25Q93038 417 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 MDFIQ99750 246 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 KLF15Q9UIH9 416 aa8.73□□□□□ -1.01
CKS1B-204ENST00000471245 SHROOM2Q13796 1616 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 ADARB2-AS1A8MUL3 147 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 OIP5O43482 229 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 CELA2BP08218 269 aaPredicted RBP8.72□□□□□ -1.01
CKS1B-204ENST00000471245 XRCC5P13010 732 aaKnown RBP8.72□□□□□ -1.01
CKS1B-204ENST00000471245 GRIN2CQ14957 1233 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 SYT9Q86SS6 491 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 SLC43A3Q8NBI5 491 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 C3orf58Q8NDZ4 430 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 LATS2Q9NRM7 1088 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 DDX41Q9UJV9 622 aaKnown RBP8.72□□□□□ -1.01
CKS1B-204ENST00000471245 GGA1Q9UJY5 639 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 PPM1HQ9ULR3 514 aa8.72□□□□□ -1.01
CKS1B-204ENST00000471245 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.72□□□□□ -1.01
CKS1B-204ENST00000471245 NRLP54845 237 aa8.71□□□□□ -1.02
CKS1B-204ENST00000471245 PCSK7Q16549 785 aa8.71□□□□□ -1.02
CKS1B-204ENST00000471245 ZNF385CQ66K41 422 aaPredicted RBP8.71□□□□□ -1.02
CKS1B-204ENST00000471245 LYPD4Q6UWN0 246 aa8.71□□□□□ -1.02
CKS1B-204ENST00000471245 DHX32Q7L7V1 743 aaKnown RBP8.71□□□□□ -1.02
CKS1B-204ENST00000471245 USP48Q86UV5 1035 aa8.71□□□□□ -1.02
CKS1B-204ENST00000471245 ZNF654Q8IZM8 581 aa8.71□□□□□ -1.02
CKS1B-204ENST00000471245 NOC4LQ9BVI4 516 aaKnown RBP8.71□□□□□ -1.02
CKS1B-204ENST00000471245 ENAMQ9NRM1 1142 aa8.71□□□□□ -1.02
CKS1B-204ENST00000471245 GGT7Q9UJ14 662 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms