RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 USP17L8P0C7I0 530 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 TAF7LQ5H9L4 462 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 EPHA10Q5JZY3 1008 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 RBM26Q5T8P6 1007 aaKnown RBP24.09■■□□□ 1.45
COL7A1-207ENST00000467985 IFFO2Q5TF58 517 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 DCPSQ96C86 337 aaKnown RBP24.09■■□□□ 1.45
COL7A1-207ENST00000467985 GMLQ99445 158 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 UTYO14607 1347 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 MYO3BQ8WXR4 1341 aa24.09■■□□□ 1.45
COL7A1-207ENST00000467985 ECE1P42892 770 aa24.08■■□□□ 1.45
COL7A1-207ENST00000467985 STRIP1Q5VSL9 837 aa24.08■■□□□ 1.45
COL7A1-207ENST00000467985 WDR33Q9C0J8 1336 aaKnown RBP24.08■■□□□ 1.44
COL7A1-207ENST00000467985 MMP14P50281 582 aa24.07■■□□□ 1.44
COL7A1-207ENST00000467985 LDHAL6AQ6ZMR3 332 aa24.07■■□□□ 1.44
COL7A1-207ENST00000467985 KRT26Q7Z3Y9 468 aa24.07■■□□□ 1.44
COL7A1-207ENST00000467985 USP48Q86UV5 1035 aa24.07■■□□□ 1.44
COL7A1-207ENST00000467985 TXNRD3Q86VQ6 643 aa24.07■■□□□ 1.44
COL7A1-207ENST00000467985 NBPF7P0C2Y1 421 aaPredicted RBP24.06■■□□□ 1.44
COL7A1-207ENST00000467985 DACT2Q5SW24 774 aa24.06■■□□□ 1.44
COL7A1-207ENST00000467985 AIDAQ96BJ3 306 aa24.06■■□□□ 1.44
COL7A1-207ENST00000467985 HHIPL1Q96JK4 782 aa24.06■■□□□ 1.44
COL7A1-207ENST00000467985 SMC4Q9NTJ3 1288 aa24.06■■□□□ 1.44
COL7A1-207ENST00000467985 C15orf52Q6ZUT6 534 aaKnown RBP24.05■■□□□ 1.44
COL7A1-207ENST00000467985 PAXIP1Q6ZW49 1069 aaPredicted RBP24.05■■□□□ 1.44
COL7A1-207ENST00000467985 SAPCD2Q86UD0 394 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 OGFOD1Q8N543 542 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 SUCLG2Q96I99 432 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 CAPNS2Q96L46 248 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 ZNF408Q9H9D4 720 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 MYOZ2Q9NPC6 264 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 CNNM1Q9NRU3 951 aa24.05■■□□□ 1.44
COL7A1-207ENST00000467985 SULF1Q8IWU6 871 aa24.04■■□□□ 1.44
COL7A1-207ENST00000467985 FBXW7Q969H0 707 aa24.04■■□□□ 1.44
COL7A1-207ENST00000467985 GGA3Q9NZ52 723 aa24.04■■□□□ 1.44
COL7A1-207ENST00000467985 A0A1B0GUL6 1792 aa24.03■■□□□ 1.44
COL7A1-207ENST00000467985 TAF5LO75529 589 aa24.03■■□□□ 1.44
COL7A1-207ENST00000467985 KLRK1P26718 216 aa24.03■■□□□ 1.44
COL7A1-207ENST00000467985 MAP2K1Q02750 393 aaPredicted RBP24.03■■□□□ 1.44
COL7A1-207ENST00000467985 TTLL5Q6EMB2 1281 aa24.03■■□□□ 1.44
COL7A1-207ENST00000467985 HELBQ8NG08 1087 aaPredicted RBP24.03■■□□□ 1.44
COL7A1-207ENST00000467985 KAZALD1Q96I82 304 aa24.03■■□□□ 1.44
COL7A1-207ENST00000467985 ZNF594Q96JF6 807 aaPredicted RBP24.03■■□□□ 1.44
COL7A1-207ENST00000467985 POLR2AP24928 1970 aaKnown RBP24.02■■□□□ 1.44
COL7A1-207ENST00000467985 SCARF1Q14162 830 aa24.02■■□□□ 1.44
COL7A1-207ENST00000467985 COL13A1Q5TAT6 717 aaPredicted RBP24.02■■□□□ 1.44
COL7A1-207ENST00000467985 ZNF804AQ7Z570 1209 aa24.02■■□□□ 1.44
COL7A1-207ENST00000467985 WBP1LQ9NX94 342 aa24.02■■□□□ 1.44
COL7A1-207ENST00000467985 ZNF646O15015 1829 aaPredicted RBP24.01■■□□□ 1.43
COL7A1-207ENST00000467985 RABL6Q3YEC7 729 aaPredicted RBP24.01■■□□□ 1.43
COL7A1-207ENST00000467985 CYP4F22Q6NT55 531 aa24.01■■□□□ 1.43
COL7A1-207ENST00000467985 BICC1Q9H694 974 aaKnown RBP24.01■■□□□ 1.43
COL7A1-207ENST00000467985 CD209Q9NNX6 404 aa24.01■■□□□ 1.43
COL7A1-207ENST00000467985 THSD7BQ9C0I4 1608 aa24.01■■□□□ 1.43
COL7A1-207ENST00000467985 PITPNM2Q9BZ72 1349 aa24.01■■□□□ 1.43
COL7A1-207ENST00000467985 IRS2Q9Y4H2 1338 aa24.01■■□□□ 1.43
COL7A1-207ENST00000467985 ADM5C9JUS6 153 aa24■■□□□ 1.43
COL7A1-207ENST00000467985 PLIN1O60240 522 aa23.99■■□□□ 1.43
COL7A1-207ENST00000467985 MAP2K2P36507 400 aa23.99■■□□□ 1.43
COL7A1-207ENST00000467985 BRPF1P55201 1214 aaPredicted RBP23.99■■□□□ 1.43
COL7A1-207ENST00000467985 GTF2IP78347 998 aa23.99■■□□□ 1.43
COL7A1-207ENST00000467985 ANGEL2Q5VTE6 544 aaKnown RBP23.99■■□□□ 1.43
COL7A1-207ENST00000467985 C2orf69Q8N8R5 385 aa23.99■■□□□ 1.43
COL7A1-207ENST00000467985 USP44Q9H0E7 712 aa23.99■■□□□ 1.43
COL7A1-207ENST00000467985 SNAP23O00161 211 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 FOXN1O15353 648 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 IL1R1P14778 569 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 CTCFP49711 727 aaPredicted RBP23.98■■□□□ 1.43
COL7A1-207ENST00000467985 GRM1Q13255 1194 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 MXD3Q9BW11 206 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 GBA2Q9HCG7 927 aaPredicted RBP23.98■■□□□ 1.43
COL7A1-207ENST00000467985 HDAC9Q9UKV0 1011 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 MROH5Q6ZUA9 1318 aa23.98■■□□□ 1.43
COL7A1-207ENST00000467985 ASTN2O75129 1339 aaPredicted RBP23.97■■□□□ 1.43
COL7A1-207ENST00000467985 HUNKP57058 714 aa23.97■■□□□ 1.43
COL7A1-207ENST00000467985 UBE4AQ14139 1066 aa23.97■■□□□ 1.43
COL7A1-207ENST00000467985 ANKRD44Q8N8A2 993 aa23.97■■□□□ 1.43
COL7A1-207ENST00000467985 API5Q9BZZ5 524 aaKnown RBP23.97■■□□□ 1.43
COL7A1-207ENST00000467985 DLK2Q6UY11 383 aa23.96■■□□□ 1.43
COL7A1-207ENST00000467985 BEGAINQ9BUH8 593 aa23.96■■□□□ 1.43
COL7A1-207ENST00000467985 KIAA0825Q8IV33 1275 aa23.95■■□□□ 1.42
COL7A1-207ENST00000467985 CDCA5Q96FF9 252 aa23.95■■□□□ 1.42
COL7A1-207ENST00000467985 PRDM10Q9NQV6 1147 aa23.95■■□□□ 1.42
COL7A1-207ENST00000467985 NOB1Q9ULX3 412 aaKnown RBP23.95■■□□□ 1.42
COL7A1-207ENST00000467985 RIPOR2Q9Y4F9 1068 aa23.95■■□□□ 1.42
COL7A1-207ENST00000467985 FKBP1AP62942 108 aaKnown RBP23.94■■□□□ 1.42
COL7A1-207ENST00000467985 NBPF9Q3BBW0 867 aa23.94■■□□□ 1.42
COL7A1-207ENST00000467985 TNS4Q8IZW8 715 aa23.94■■□□□ 1.42
COL7A1-207ENST00000467985 PUS3Q9BZE2 481 aaKnown RBP23.94■■□□□ 1.42
COL7A1-207ENST00000467985 HDAC5Q9UQL6 1122 aa23.94■■□□□ 1.42
COL7A1-207ENST00000467985 KIF16BQ96L93 1317 aa23.93■■□□□ 1.42
COL7A1-207ENST00000467985 WNT10BO00744 389 aa23.93■■□□□ 1.42
COL7A1-207ENST00000467985 RARSP54136 660 aaKnown RBP23.93■■□□□ 1.42
COL7A1-207ENST00000467985 AOC2O75106 756 aa23.92■■□□□ 1.42
COL7A1-207ENST00000467985 SASH1O94885 1247 aa23.92■■□□□ 1.42
COL7A1-207ENST00000467985 FKBP1BP68106 108 aa23.92■■□□□ 1.42
COL7A1-207ENST00000467985 NOGQ13253 232 aa23.92■■□□□ 1.42
COL7A1-207ENST00000467985 MIER1Q8N108 512 aa23.92■■□□□ 1.42
COL7A1-207ENST00000467985 HIBADHP31937 336 aaKnown RBP23.91■■□□□ 1.42
COL7A1-207ENST00000467985 METTL24Q5JXM2 366 aa23.91■■□□□ 1.42
COL7A1-207ENST00000467985 RGMBQ6NW40 437 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms