RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 MTHFSP49914 203 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 UBAP2LQ14157 1087 aaKnown RBP7.3□□□□□ -1.24
VPS41-211ENST00000466017 CRTC2Q53ET0 693 aaPredicted RBP7.3□□□□□ -1.24
VPS41-211ENST00000466017 TMEM214Q6NUQ4 689 aaKnown RBP7.3□□□□□ -1.24
VPS41-211ENST00000466017 RIPOR1Q6ZS17 1223 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS41-211ENST00000466017 NGEFQ8N5V2 710 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 KCNH5Q8NCM2 988 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 TPCN2Q8NHX9 752 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 ZDHHC1Q8WTX9 485 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 ZNF837Q96EG3 531 aaPredicted RBP7.3□□□□□ -1.24
VPS41-211ENST00000466017 ZNF594Q96JF6 807 aaPredicted RBP7.3□□□□□ -1.24
VPS41-211ENST00000466017 CFAP53Q96M91 514 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 CNTNAP3BQ96NU0 1288 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 CNTNAP3Q9BZ76 1288 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 POLKQ9UBT6 870 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 DYRK1BQ9Y463 629 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 USP54Q70EL1 1684 aa7.3□□□□□ -1.24
VPS41-211ENST00000466017 SMG6Q86US8 1419 aaKnown RBP7.29□□□□□ -1.24
VPS41-211ENST00000466017 A6NJY4 79 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 RFX1P22670 979 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 MTFR1Q15390 333 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 CCDC102BQ68D86 513 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 BRINP3Q76B58 766 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 WHAMMQ8TF30 809 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 C1orf115Q9H7X2 142 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 KIF20BQ96Q89 1820 aa7.29□□□□□ -1.24
VPS41-211ENST00000466017 MSX1P28360 303 aa7.28□□□□□ -1.24
VPS41-211ENST00000466017 ABTB2Q8N961 1025 aa7.28□□□□□ -1.24
VPS41-211ENST00000466017 TSEN2Q8NCE0 465 aaKnown RBP7.28□□□□□ -1.24
VPS41-211ENST00000466017 GTPBP3Q969Y2 492 aaKnown RBP7.28□□□□□ -1.24
VPS41-211ENST00000466017 PNNQ9H307 717 aaKnown RBP7.28□□□□□ -1.24
VPS41-211ENST00000466017 RUBCNLQ9H714 662 aa7.28□□□□□ -1.24
VPS41-211ENST00000466017 DNAAF2Q9NVR5 837 aaKnown RBP7.28□□□□□ -1.24
VPS41-211ENST00000466017 NUDCQ9Y266 331 aa7.28□□□□□ -1.24
VPS41-211ENST00000466017 SPATA31A3Q5VYP0 1347 aa7.27□□□□□ -1.24
VPS41-211ENST00000466017 LZTS3O60299 673 aaPredicted RBP7.27□□□□□ -1.25
VPS41-211ENST00000466017 TOM1O60784 492 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 PLA2G4AP47712 749 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 FOXK2Q01167 660 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 SV2AQ7L0J3 742 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 FAM9BQ8IZU0 186 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 RHBDD1Q8TEB9 315 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 USP19O94966 1318 aa7.27□□□□□ -1.25
VPS41-211ENST00000466017 CDK2AP1O14519 115 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 DIAPH1O60610 1272 aaKnown RBP7.26□□□□□ -1.25
VPS41-211ENST00000466017 F11P03951 625 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 ATP4AP20648 1035 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 RASA1P20936 1047 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 TXLNAP40222 546 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 PTK7Q13308 1070 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 CNGB1Q14028 1251 aaPredicted RBP7.26□□□□□ -1.25
VPS41-211ENST00000466017 WDR43Q15061 677 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS41-211ENST00000466017 TRIM22Q8IYM9 498 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 C7orf43Q8WVR3 580 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 SCHIP1Q9P0W5 487 aaPredicted RBP7.26□□□□□ -1.25
VPS41-211ENST00000466017 ADAMTS8Q9UP79 889 aa7.26□□□□□ -1.25
VPS41-211ENST00000466017 MAP2P11137 1827 aaKnown RBP7.26□□□□□ -1.25
VPS41-211ENST00000466017 TRPM3Q9HCF6 1732 aaPredicted RBP7.26□□□□□ -1.25
VPS41-211ENST00000466017 ARHGEF10O15013 1369 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 C21orf2O43822 256 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 GCP02774 474 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 IL13P35225 146 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 WDR44Q5JSH3 913 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 ARHGEF25Q86VW2 580 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 IP6K1Q92551 441 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 AIDAQ96BJ3 306 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 ARXQ96QS3 562 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 TSPAN10Q9H1Z9 355 aaPredicted RBP7.25□□□□□ -1.25
VPS41-211ENST00000466017 MAP3K19Q56UN5 1328 aa7.25□□□□□ -1.25
VPS41-211ENST00000466017 COL3A1P02461 1466 aaPredicted RBP7.24□□□□□ -1.25
VPS41-211ENST00000466017 PXDNQ92626 1479 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 CDK12Q9NYV4 1490 aaPredicted RBP7.24□□□□□ -1.25
VPS41-211ENST00000466017 SLIT3O75094 1523 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 CENPBP07199 599 aaPredicted RBP7.24□□□□□ -1.25
VPS41-211ENST00000466017 TNNT2P45379 298 aaPredicted RBP7.24□□□□□ -1.25
VPS41-211ENST00000466017 PDE3BQ13370 1112 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 GNASQ5JWF2 1037 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 SIX5Q8N196 739 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 LARGE2Q8N3Y3 721 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 LRRC59Q96AG4 307 aaKnown RBP7.24□□□□□ -1.25
VPS41-211ENST00000466017 PIK3C2AO00443 1686 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 ALS2Q96Q42 1657 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 BLMP54132 1417 aaPredicted RBP7.24□□□□□ -1.25
VPS41-211ENST00000466017 ZBED9Q6R2W3 1325 aa7.24□□□□□ -1.25
VPS41-211ENST00000466017 RTL1A6NKG5 1358 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 FLT4P35916 1363 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 DPYDQ12882 1025 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 CCDC27Q2M243 656 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 SLC9A9Q8IVB4 645 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 RUNDC1Q96C34 613 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 PLEKHF1Q96S99 279 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 TNS3Q68CZ2 1445 aa7.23□□□□□ -1.25
VPS41-211ENST00000466017 PHRF1Q9P1Y6 1649 aaKnown RBP7.23□□□□□ -1.25
VPS41-211ENST00000466017 CPDO75976 1380 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 MARF1Q9Y4F3 1742 aaKnown RBP7.22□□□□□ -1.25
VPS41-211ENST00000466017 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.22□□□□□ -1.25
VPS41-211ENST00000466017 A0A1B0GTH6 734 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 FBLN1P23142 703 aa7.22□□□□□ -1.25
VPS41-211ENST00000466017 HOXC9P31274 260 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms