RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 IL15P40933 162 aaPredicted RBP18.04■□□□□ 0.48
SQSTM1-205ENST00000464493 C15orf52Q6ZUT6 534 aaKnown RBP18.04■□□□□ 0.48
SQSTM1-205ENST00000464493 PODNQ7Z5L7 613 aa18.04■□□□□ 0.48
SQSTM1-205ENST00000464493 L3MBTL3Q96JM7 780 aaPredicted RBP18.04■□□□□ 0.48
SQSTM1-205ENST00000464493 COA1Q9GZY4 146 aa18.04■□□□□ 0.48
SQSTM1-205ENST00000464493 KCNQ5Q9NR82 932 aa18.04■□□□□ 0.48
SQSTM1-205ENST00000464493 KIF3CO14782 793 aa18.03■□□□□ 0.48
SQSTM1-205ENST00000464493 POLA2Q14181 598 aa18.03■□□□□ 0.48
SQSTM1-205ENST00000464493 SSH3Q8TE77 659 aa18.03■□□□□ 0.48
SQSTM1-205ENST00000464493 CEP126Q9P2H0 1117 aa18.03■□□□□ 0.48
SQSTM1-205ENST00000464493 IRS2Q9Y4H2 1338 aa18.02■□□□□ 0.48
SQSTM1-205ENST00000464493 CEP85Q6P2H3 762 aa18.02■□□□□ 0.48
SQSTM1-205ENST00000464493 IQCA1LA6NCM1 817 aa18.01■□□□□ 0.47
SQSTM1-205ENST00000464493 PSMD14O00487 310 aa18.01■□□□□ 0.47
SQSTM1-205ENST00000464493 PUM3Q15397 648 aaKnown RBP18.01■□□□□ 0.47
SQSTM1-205ENST00000464493 CD209Q9NNX6 404 aa18.01■□□□□ 0.47
SQSTM1-205ENST00000464493 FGFR2P21802 821 aa18■□□□□ 0.47
SQSTM1-205ENST00000464493 G3BP1Q13283 466 aaKnown RBP eCLIP18■□□□□ 0.47
SQSTM1-205ENST00000464493 ZNF804AQ7Z570 1209 aa18■□□□□ 0.47
SQSTM1-205ENST00000464493 RPAP2Q8IXW5 612 aaPredicted RBP18■□□□□ 0.47
SQSTM1-205ENST00000464493 C16orf71Q8IYS4 520 aaPredicted RBP18■□□□□ 0.47
SQSTM1-205ENST00000464493 HACL1Q9UJ83 578 aa18■□□□□ 0.47
SQSTM1-205ENST00000464493 SCN9AQ15858 1988 aa18■□□□□ 0.47
SQSTM1-205ENST00000464493 SCN4AP35499 1836 aa18■□□□□ 0.47
SQSTM1-205ENST00000464493 USP17L3A6NCW0 530 aa17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 USP17L4A6NCW7 530 aa17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 VIL1P09327 827 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 IFIT1P09914 478 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 LMOD1P29536 600 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 GMPSP49915 693 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 SCNN1DP51172 638 aa17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 USP17L1Q7RTZ2 530 aa17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 LPIN2Q92539 896 aa17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 FAM84BQ96KN1 310 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-205ENST00000464493 SURF6O75683 361 aaKnown RBP17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 SLC5A1P13866 664 aa17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 IL1R1P14778 569 aa17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 HIBADHP31937 336 aaKnown RBP17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 GYG1P46976 350 aa17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 CAVIN4Q5BKX8 364 aa17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 ZBTB12Q9Y330 459 aaPredicted RBP17.98■□□□□ 0.47
SQSTM1-205ENST00000464493 TOMM70O94826 608 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 EPHX2P34913 555 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 TFCP2Q12800 502 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 ATP2B3Q16720 1220 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 STRIP1Q5VSL9 837 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 TTLL5Q6EMB2 1281 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 FBXO33Q7Z6M2 555 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 VPS37DQ86XT2 251 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 DPF2Q92785 391 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 TAF1DQ9H5J8 278 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 GPRC5DQ9NZD1 345 aa17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 NOP58Q9Y2X3 529 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 SUPT16HQ9Y5B9 1047 aaKnown RBP17.97■□□□□ 0.47
SQSTM1-205ENST00000464493 PSME4Q14997 1843 aa17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 HMMRO75330 724 aa17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 RPS12P25398 132 aaKnown RBP17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 EPS15P42566 896 aa17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 OS9Q13438 667 aaPredicted RBP17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 RSBN1LQ6PCB5 846 aaPredicted RBP17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 SIRT2Q8IXJ6 389 aa17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 FBXW7Q969H0 707 aa17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 CNOT7Q9UIV1 285 aaKnown RBP17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 AKAP2Q9Y2D5 859 aa17.96■□□□□ 0.47
SQSTM1-205ENST00000464493 SASH1O94885 1247 aa17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 BCAMP50895 628 aa17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 GTF2IP78347 998 aa17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 DACT2Q5SW24 774 aa17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 AGBL3Q8NEM8 1001 aa17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 TDRD7Q8NHU6 1098 aaKnown RBP17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 CRBNQ96SW2 442 aa17.95■□□□□ 0.46
SQSTM1-205ENST00000464493 H7C1D1 291 aa17.94■□□□□ 0.46
SQSTM1-205ENST00000464493 TIMM10P62072 90 aa17.94■□□□□ 0.46
SQSTM1-205ENST00000464493 PNMA8AQ86V59 439 aaPredicted RBP17.94■□□□□ 0.46
SQSTM1-205ENST00000464493 ADARB2Q9NS39 739 aaKnown RBP17.94■□□□□ 0.46
SQSTM1-205ENST00000464493 A0A1B0GUL7 405 aa17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 EAPPQ56P03 285 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 MICALL2Q8IY33 904 aa17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 RBM46Q8TBY0 533 aaKnown RBP17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 GMLQ99445 158 aa17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 MXD3Q9BW11 206 aa17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-205ENST00000464493 SHTN1A0MZ66 631 aa17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 FRAT2O75474 233 aaPredicted RBP17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 HSP90AB4PQ58FF6 505 aa17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 USP50Q70EL3 339 aaPredicted RBP17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 NEUROD6Q96NK8 337 aa17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 EXOC6BQ9Y2D4 811 aa17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 MYO3BQ8WXR4 1341 aa17.92■□□□□ 0.46
SQSTM1-205ENST00000464493 ZNF609O15014 1411 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 POTEIP0CG38 1075 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 POTEJP0CG39 1038 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 C1QTNF8P60827 252 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 LDHDQ86WU2 507 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 ERC1Q8IUD2 1116 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 XAGE2Q96GT9 111 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 GPR108Q9NPR9 543 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 IQSEC3Q9UPP2 1182 aaPredicted RBP17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 JAG2Q9Y219 1238 aa17.91■□□□□ 0.46
SQSTM1-205ENST00000464493 CLEC11AQ9Y240 323 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms