RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 AVENQ9NQS1 362 aaPredicted RBP9.17□□□□□ -0.94
USP54-206ENST00000433394 DZANK1Q9NVP4 752 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 PCDHGB7Q9Y5F8 929 aa9.17□□□□□ -0.94
USP54-206ENST00000433394 PDE2AO00408 941 aaPredicted RBP9.16□□□□□ -0.94
USP54-206ENST00000433394 PPFIA3O75145 1194 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 SIN3BO75182 1162 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 MX2P20592 715 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 ARID5AQ03989 594 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 ZNF468Q5VIY5 522 aaPredicted RBP9.16□□□□□ -0.94
USP54-206ENST00000433394 CEP120Q8N960 986 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 TMEM102Q8N9M5 508 aaPredicted RBP9.16□□□□□ -0.94
USP54-206ENST00000433394 GLIS3Q8NEA6 775 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 ANKRD24Q8TF21 1146 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 ABCB6Q9NP58 842 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 SAMM50Q9Y512 469 aa9.16□□□□□ -0.94
USP54-206ENST00000433394 GPR25O00155 361 aa9.15□□□□□ -0.94
USP54-206ENST00000433394 DNAJA1P31689 397 aaKnown RBP9.15□□□□□ -0.94
USP54-206ENST00000433394 SPATA32Q96LK8 384 aa9.15□□□□□ -0.94
USP54-206ENST00000433394 TINF2Q9BSI4 451 aa9.15□□□□□ -0.94
USP54-206ENST00000433394 RSRP1Q9BUV0 290 aa9.15□□□□□ -0.94
USP54-206ENST00000433394 DNAJB12Q9NXW2 375 aaKnown RBP9.15□□□□□ -0.94
USP54-206ENST00000433394 GBP2P32456 591 aaPredicted RBP9.14□□□□□ -0.95
USP54-206ENST00000433394 CTBSQ01459 385 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 MLLT1Q03111 559 aaPredicted RBP9.14□□□□□ -0.95
USP54-206ENST00000433394 PPP2R3AQ06190 1150 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 GRIN2CQ14957 1233 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 C3orf58Q8NDZ4 430 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 DDX54Q8TDD1 881 aaKnown RBP9.14□□□□□ -0.95
USP54-206ENST00000433394 TCF12Q99081 682 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 PBX4Q9BYU1 374 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 BHLHE41Q9C0J9 482 aaPredicted RBP9.14□□□□□ -0.95
USP54-206ENST00000433394 PRKAG2Q9UGJ0 569 aa9.14□□□□□ -0.95
USP54-206ENST00000433394 GPN3Q9UHW5 284 aaPredicted RBP9.14□□□□□ -0.95
USP54-206ENST00000433394 A0A096LPE4 126 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 A0A1W2PPZ6 126 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 SNRPBP14678 240 aaKnown RBP9.13□□□□□ -0.95
USP54-206ENST00000433394 ADH6P28332 368 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 RPS26P11Q5JNZ5 115 aaPredicted RBP9.13□□□□□ -0.95
USP54-206ENST00000433394 COL13A1Q5TAT6 717 aaPredicted RBP9.13□□□□□ -0.95
USP54-206ENST00000433394 ELMSAN1Q6PJG2 1045 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 TPTE2Q6XPS3 522 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 HFE2Q6ZVN8 426 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 ERMP1Q7Z2K6 904 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 FAM35AQ86V20 835 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 NANOS1Q8WY41 292 aaKnown RBP9.13□□□□□ -0.95
USP54-206ENST00000433394 KBTBD4Q9NVX7 518 aa9.13□□□□□ -0.95
USP54-206ENST00000433394 J3QW42 95 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 ITPKAP23677 461 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 MAP2K3P46734 347 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 CEP135Q66GS9 1140 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 KIAA0825Q8IV33 1275 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 NXPE3Q969Y0 559 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 SPON2Q9BUD6 331 aa9.12□□□□□ -0.95
USP54-206ENST00000433394 CPB1P15086 417 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 PTPRAP18433 802 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 ALAS2P22557 587 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 PCBP4P57723 403 aaKnown RBP9.11□□□□□ -0.95
USP54-206ENST00000433394 CABP4P57796 275 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 RACK1P63244 317 aaKnown RBP9.11□□□□□ -0.95
USP54-206ENST00000433394 BSNDQ8WZ55 320 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 GPRASP2Q96D09 838 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 TMEM74Q96NL1 305 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 RASSF4Q9H2L5 321 aa9.11□□□□□ -0.95
USP54-206ENST00000433394 SRA1Q9HD15 236 aaKnown RBP9.11□□□□□ -0.95
USP54-206ENST00000433394 EIF4EBP3O60516 100 aaPredicted RBP9.1□□□□□ -0.95
USP54-206ENST00000433394 ARAFP10398 606 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 ACPPP15309 386 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 GRIA4P48058 902 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 TNNI2P48788 182 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 MAP3K11Q16584 847 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 CACTIN-AS1Q8N1I8 211 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 TNFRSF25Q93038 417 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 PLD4Q96BZ4 506 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 ARMC5Q96C12 935 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 CNTNAP3BQ96NU0 1288 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 CNTNAP3Q9BZ76 1288 aa9.1□□□□□ -0.95
USP54-206ENST00000433394 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.1□□□□□ -0.95
USP54-206ENST00000433394 MINDY4BA8MYZ0 360 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 FBXO24O75426 580 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 TRPA1O75762 1119 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 GTF2F1P35269 517 aaKnown RBP eCLIP9.09□□□□□ -0.951e-8■■■■■ 57
USP54-206ENST00000433394 ADH7P40394 386 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 HNRNPUQ00839 825 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP54-206ENST00000433394 PAK2Q13177 524 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 SPRED3Q2MJR0 410 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 SOGA3Q5TF21 947 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.09□□□□□ -0.95
USP54-206ENST00000433394 CLEC4MQ9H2X3 399 aaPredicted RBP9.09□□□□□ -0.95
USP54-206ENST00000433394 TMEM39AQ9NV64 488 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 SLC6A14Q9UN76 642 aa9.09□□□□□ -0.95
USP54-206ENST00000433394 EIF4A3P38919 411 aaKnown RBP9.08□□□□□ -0.96
USP54-206ENST00000433394 ATP11AP98196 1134 aa9.08□□□□□ -0.96
USP54-206ENST00000433394 GMLQ99445 158 aa9.08□□□□□ -0.96
USP54-206ENST00000433394 HIRIP3Q9BW71 556 aaPredicted RBP9.08□□□□□ -0.96
USP54-206ENST00000433394 ZNF576Q9H609 170 aa9.08□□□□□ -0.96
USP54-206ENST00000433394 COPRSQ9NQ92 184 aa9.08□□□□□ -0.96
USP54-206ENST00000433394 SUPT16HQ9Y5B9 1047 aaKnown RBP9.08□□□□□ -0.96
USP54-206ENST00000433394 METTL12A8MUP2 240 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 ZBTB42B2RXF5 422 aa9.07□□□□□ -0.96
USP54-206ENST00000433394 GJA8P48165 433 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms