RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 ADAMTS13Q76LX8 1427 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 MCMDC2Q4G0Z9 681 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 TICAM2Q86XR7 235 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 KIAA1524Q8TCG1 905 aa13.83□□□□□ -0.2
HMGB1-206ENST00000405805 ZSCAN25Q6NSZ9 544 aa13.82□□□□□ -0.2
HMGB1-206ENST00000405805 CACTINQ8WUQ7 758 aaKnown RBP13.82□□□□□ -0.2
HMGB1-206ENST00000405805 ATP2B3Q16720 1220 aa13.82□□□□□ -0.2
HMGB1-206ENST00000405805 ELF2Q15723 593 aa13.82□□□□□ -0.2
HMGB1-206ENST00000405805 SAFBQ15424 915 aaKnown RBP eCLIP13.81□□□□□ -0.2
HMGB1-206ENST00000405805 AXDND1Q5T1B0 1012 aaPredicted RBP13.81□□□□□ -0.2
HMGB1-206ENST00000405805 DHX16O60231 1041 aaKnown RBP13.81□□□□□ -0.2
HMGB1-206ENST00000405805 IMMTQ16891 758 aaKnown RBP13.81□□□□□ -0.2
HMGB1-206ENST00000405805 SPECC1Q5M775 1068 aa13.81□□□□□ -0.2
HMGB1-206ENST00000405805 USP28Q96RU2 1077 aa13.81□□□□□ -0.2
HMGB1-206ENST00000405805 ALDH1L1O75891 902 aa13.81□□□□□ -0.2
HMGB1-206ENST00000405805 CLSTN2Q9H4D0 955 aa13.8□□□□□ -0.2
HMGB1-206ENST00000405805 ZNF215Q9UL58 517 aaPredicted RBP13.8□□□□□ -0.2
HMGB1-206ENST00000405805 ZBTB12Q9Y330 459 aaPredicted RBP13.8□□□□□ -0.2
HMGB1-206ENST00000405805 LRRFIP1Q32MZ4 808 aaKnown RBP13.8□□□□□ -0.2
HMGB1-206ENST00000405805 C19orf44Q9H6X5 657 aa13.8□□□□□ -0.2
HMGB1-206ENST00000405805 GJB4Q9NTQ9 266 aa13.8□□□□□ -0.2
HMGB1-206ENST00000405805 PTPRUQ92729 1446 aa13.8□□□□□ -0.2
HMGB1-206ENST00000405805 IFNL2Q8IZJ0 200 aa13.8□□□□□ -0.2
HMGB1-206ENST00000405805 CCDC102AQ96A19 550 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 HMG20BQ9P0W2 317 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 SASH1O94885 1247 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 C11orf57Q6ZUT1 292 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 GPHNQ9NQX3 736 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 SHPRHQ149N8 1683 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 LOC102724159A0A0B4J2E5 919 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 MYCNP04198 464 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 PWP2Q15269 919 aaKnown RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 MRPS27Q92552 414 aaKnown RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 ZSCAN16Q9H4T2 348 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 AXIN2Q9Y2T1 843 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 DIP2BQ9P265 1576 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 MAP2P11137 1827 aaKnown RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 TTC14Q96N46 770 aa13.79□□□□□ -0.2
HMGB1-206ENST00000405805 RNF216Q9NWF9 866 aaPredicted RBP13.79□□□□□ -0.2
HMGB1-206ENST00000405805 RICTORQ6R327 1708 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 ZNF213O14771 459 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 GIGYF1O75420 1035 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 TOP1P11387 765 aaKnown RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 USP8P40818 1118 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 METTL24Q5JXM2 366 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 PCMTD1Q96MG8 357 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 SMTNL1A8MU46 457 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 AP5Z1O43299 807 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 GOLGA8FQ08AF8 430 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 GOLGA8DPQ0D2H9 430 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 COL9A3Q14050 684 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 DHX32Q7L7V1 743 aaKnown RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 ZNF496Q96IT1 587 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 FEZ1Q99689 392 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 PAG1Q9NWQ8 432 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 PAXBP1Q9Y5B6 917 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 TTC31Q49AM3 519 aaPredicted RBP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 TNNI3KQ59H18 835 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 KRBA2Q6ZNG9 492 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 MAP4K1Q92918 833 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 KCNF1Q9H3M0 494 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 DDX21Q9NR30 783 aaKnown RBP eCLIP13.78□□□□□ -0.2
HMGB1-206ENST00000405805 FPGT-TNNI3KV9GXZ4 949 aa13.78□□□□□ -0.2
HMGB1-206ENST00000405805 ZNF790Q6PG37 636 aa13.77□□□□□ -0.2
HMGB1-206ENST00000405805 UBASH3AP57075 661 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 CNNM3Q8NE01 707 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 HELBQ8NG08 1087 aaPredicted RBP13.77□□□□□ -0.21
HMGB1-206ENST00000405805 IQSEC3Q9UPP2 1182 aaPredicted RBP13.77□□□□□ -0.21
HMGB1-206ENST00000405805 CTAGE5O15320 804 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 GNG11P61952 73 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 NECTIN1Q15223 517 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 MYL10Q9BUA6 226 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 DBNLQ9UJU6 430 aaKnown RBP13.77□□□□□ -0.21
HMGB1-206ENST00000405805 IFT172Q9UG01 1749 aa13.77□□□□□ -0.21
HMGB1-206ENST00000405805 ERICH2A1L162 156 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 CYP21A2P08686 494 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 IRX5P78411 483 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-206ENST00000405805 SLC4A8Q2Y0W8 1093 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 ARHGAP29Q52LW3 1261 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 UTP14AQ9BVJ6 771 aaKnown RBP13.76□□□□□ -0.21
HMGB1-206ENST00000405805 AOX1Q06278 1338 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 SPTLC2O15270 562 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 BMS1Q14692 1282 aaKnown RBP13.76□□□□□ -0.21
HMGB1-206ENST00000405805 CCDC34Q96HJ3 373 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 MYCBPQ99417 103 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-206ENST00000405805 PRC1O43663 620 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 TAF5LO75529 589 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 SCRN1Q12765 414 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 ARHGEF25Q86VW2 580 aa13.76□□□□□ -0.21
HMGB1-206ENST00000405805 RPAP1Q9BWH6 1393 aaPredicted RBP13.76□□□□□ -0.21
HMGB1-206ENST00000405805 SNRPA1P09661 255 aaKnown RBP13.75□□□□□ -0.21
HMGB1-206ENST00000405805 SYKP43405 635 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 GCKRQ14397 625 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 E2F4Q16254 413 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 ERCC6LQ2NKX8 1250 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 CCDC144BQ3MJ40 725 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 EPHA10Q5JZY3 1008 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 TM6SF1Q9BZW5 370 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 ACBD3Q9H3P7 528 aa13.75□□□□□ -0.21
HMGB1-206ENST00000405805 MINDY4BA8MYZ0 360 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms