RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 KRT86O43790 486 aa18.16■□□□□ 0.5
COL18A1-203ENST00000359759 TYRO3Q06418 890 aa18.16■□□□□ 0.5
COL18A1-203ENST00000359759 CRNKL1Q9BZJ0 848 aaKnown RBP18.16■□□□□ 0.5
COL18A1-203ENST00000359759 ADAMTS2O95450 1211 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 CAVIN2O95810 425 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 PRPHP41219 470 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 PICALMQ13492 652 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 FAM76AQ8TAV0 307 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 RBM8AQ9Y5S9 174 aaKnown RBP18.15■□□□□ 0.5
COL18A1-203ENST00000359759 RSRC1Q96IZ7 334 aaKnown RBP18.15■□□□□ 0.5
COL18A1-203ENST00000359759 F13A1P00488 732 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 NBPF7P0C2Y1 421 aaPredicted RBP18.15■□□□□ 0.5
COL18A1-203ENST00000359759 ZBTB21Q9ULJ3 1066 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 VIMP08670 466 aaKnown RBP18.15■□□□□ 0.5
COL18A1-203ENST00000359759 NEK11Q8NG66 645 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 LMBR1Q8WVP7 490 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 CCDC42Q96M95 316 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 NAPAP54920 295 aa18.15■□□□□ 0.5
COL18A1-203ENST00000359759 WDHD1O75717 1129 aaPredicted RBP18.14■□□□□ 0.5
COL18A1-203ENST00000359759 SETDB1Q15047 1291 aa18.14■□□□□ 0.5
COL18A1-203ENST00000359759 ANKLE2Q86XL3 938 aa18.14■□□□□ 0.5
COL18A1-203ENST00000359759 TRIM7Q9C029 511 aa18.14■□□□□ 0.5
COL18A1-203ENST00000359759 RAPGEF3O95398 923 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 CEP85LQ5SZL2 805 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 TXNDC16Q9P2K2 825 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 ZKSCAN5Q9Y2L8 839 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 CYP7A1P22680 504 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 MCM7P33993 719 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 PLEKHH2Q8IVE3 1493 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 NAIPQ13075 1403 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 PI4KAP2A4QPH2 592 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 PI4KAP1Q8N8J0 262 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 CCDC65Q8IXS2 484 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 IRX5P78411 483 aaPredicted RBP18.14■□□□□ 0.49
COL18A1-203ENST00000359759 AMOTQ4VCS5 1084 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 WDR66Q8TBY9 1149 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 GTPBP4Q9BZE4 634 aaKnown RBP18.14■□□□□ 0.49
COL18A1-203ENST00000359759 MBIPQ9NS73 344 aa18.14■□□□□ 0.49
COL18A1-203ENST00000359759 NUCB1Q02818 461 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 SF3A3Q12874 501 aaKnown RBP eCLIP18.13■□□□□ 0.493e-7■■■■□ 23.3
COL18A1-203ENST00000359759 KRT23Q9C075 422 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 U2AF2P26368 475 aaKnown RBP eCLIP18.13■□□□□ 0.492e-6■□□□□ 9.6
COL18A1-203ENST00000359759 RNASE9P60153 205 aaKnown RBP18.13■□□□□ 0.49
COL18A1-203ENST00000359759 STIM2Q9P246 746 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 DNAJC5BQ9UF47 199 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 STMN2Q93045 179 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 ATP6V0A2Q9Y487 856 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 FAM169AQ9Y6X4 670 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 INTS8Q75QN2 995 aaKnown RBP18.13■□□□□ 0.49
COL18A1-203ENST00000359759 ZNF622Q969S3 477 aaKnown RBP eCLIP18.13■□□□□ 0.49
COL18A1-203ENST00000359759 ABCC11Q96J66 1382 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 MRC2Q9UBG0 1479 aa18.13■□□□□ 0.49
COL18A1-203ENST00000359759 RAPGEF1Q13905 1077 aa18.12■□□□□ 0.49
COL18A1-203ENST00000359759 C16orf71Q8IYS4 520 aaPredicted RBP18.12■□□□□ 0.49
COL18A1-203ENST00000359759 CIB2O75838 187 aa18.12■□□□□ 0.49
COL18A1-203ENST00000359759 LACTBP83111 547 aaPredicted RBP18.12■□□□□ 0.49
COL18A1-203ENST00000359759 CCDC61Q9Y6R9 512 aa18.12■□□□□ 0.49
COL18A1-203ENST00000359759 TTC36A6NLP5 189 aa18.12■□□□□ 0.49
COL18A1-203ENST00000359759 MIPOL1Q8TD10 442 aa18.12■□□□□ 0.49
COL18A1-203ENST00000359759 CDC5LQ99459 802 aaKnown RBP18.12■□□□□ 0.49
COL18A1-203ENST00000359759 TCHPQ9BT92 498 aa18.12■□□□□ 0.49
COL18A1-203ENST00000359759 DCAF17Q5H9S7 520 aaPredicted RBP18.11■□□□□ 0.49
COL18A1-203ENST00000359759 PPP1R21Q6ZMI0 780 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 VTI1AQ96AJ9 217 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.11■□□□□ 0.49
COL18A1-203ENST00000359759 RXRAP19793 462 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 CCT6AP40227 531 aaKnown RBP18.11■□□□□ 0.49
COL18A1-203ENST00000359759 RASA3Q14644 834 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 ERCC3P19447 782 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 MAP3K9P80192 1104 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 LDHCP07864 332 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 HDXQ7Z353 690 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 USP37Q86T82 979 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 RHPN1Q8TCX5 695 aa18.11■□□□□ 0.49
COL18A1-203ENST00000359759 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.11■□□□□ 0.49
COL18A1-203ENST00000359759 SPTLC2O15270 562 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 ATP11AP98196 1134 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 ESYT1Q9BSJ8 1104 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 IMPG2Q9BZV3 1241 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 SYNJ2O15056 1496 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 CEP120Q8N960 986 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 CTNND2Q9UQB3 1225 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 PPP2R3AQ06190 1150 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 SPAG1Q07617 926 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 SMARCC2Q8TAQ2 1214 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 MAK16Q9BXY0 300 aaKnown RBP18.1■□□□□ 0.49
COL18A1-203ENST00000359759 APOBRQ0VD83 1088 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 VAV2P52735 878 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 GEN1Q17RS7 908 aa18.1■□□□□ 0.49
COL18A1-203ENST00000359759 PROCA1Q8NCQ7 364 aaPredicted RBP18.1■□□□□ 0.49
COL18A1-203ENST00000359759 MTRF1LQ9UGC7 380 aaKnown RBP18.1■□□□□ 0.49
COL18A1-203ENST00000359759 EPSTI1Q96J88 318 aa18.09■□□□□ 0.49
COL18A1-203ENST00000359759 RASSF4Q9H2L5 321 aa18.09■□□□□ 0.49
COL18A1-203ENST00000359759 KRT2P35908 639 aa18.09■□□□□ 0.49
COL18A1-203ENST00000359759 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.09■□□□□ 0.493e-10■■■□□ 17.8
COL18A1-203ENST00000359759 ATP2A2P16615 1042 aaKnown RBP18.09■□□□□ 0.49
COL18A1-203ENST00000359759 NMIQ13287 307 aaPredicted RBP18.09■□□□□ 0.49
COL18A1-203ENST00000359759 EHBP1L1Q8N3D4 1523 aa18.09■□□□□ 0.49
COL18A1-203ENST00000359759 KRT5P13647 590 aa18.09■□□□□ 0.49
COL18A1-203ENST00000359759 SNX16P57768 344 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms