RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 ZNF609O15014 1411 aa21.15■□□□□ 0.98
CLN3-203ENST00000357806 IRS2Q9Y4H2 1338 aa21.14■□□□□ 0.98
CLN3-203ENST00000357806 SNAP23O00161 211 aa21.14■□□□□ 0.98
CLN3-203ENST00000357806 EYA2O00167 538 aa21.14■□□□□ 0.98
CLN3-203ENST00000357806 SRGAP3O43295 1099 aa21.14■□□□□ 0.98
CLN3-203ENST00000357806 GMPSP49915 693 aaPredicted RBP21.14■□□□□ 0.98
CLN3-203ENST00000357806 UBE4AQ14139 1066 aa21.14■□□□□ 0.98
CLN3-203ENST00000357806 GPRC5DQ9NZD1 345 aa21.14■□□□□ 0.98
CLN3-203ENST00000357806 PNMA8AQ86V59 439 aaPredicted RBP21.13■□□□□ 0.97
CLN3-203ENST00000357806 SMC1BQ8NDV3 1235 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 KCNQ5Q9NR82 932 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 ZBTB7BO15156 539 aaPredicted RBP21.13■□□□□ 0.97
CLN3-203ENST00000357806 CIAO1O76071 339 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 PDE8BO95263 885 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 RPS12P25398 132 aaKnown RBP21.13■□□□□ 0.97
CLN3-203ENST00000357806 FSTL1Q12841 308 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 ZNF804AQ7Z570 1209 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 VGLL2Q8N8G2 317 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 SIL1Q9H173 461 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 COPRSQ9NQ92 184 aa21.13■□□□□ 0.97
CLN3-203ENST00000357806 MVPQ14764 893 aaKnown RBP21.12■□□□□ 0.97
CLN3-203ENST00000357806 EAPPQ56P03 285 aaPredicted RBP21.12■□□□□ 0.97
CLN3-203ENST00000357806 ZBTB12Q9Y330 459 aaPredicted RBP21.12■□□□□ 0.97
CLN3-203ENST00000357806 USP17L3A6NCW0 530 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 USP17L4A6NCW7 530 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 VIL1P09327 827 aaKnown RBP21.11■□□□□ 0.97
CLN3-203ENST00000357806 EPS15P42566 896 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 USP17L1Q7RTZ2 530 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 LDHDQ86WU2 507 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 DPF2Q92785 391 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 ADARB2Q9NS39 739 aaKnown RBP21.11■□□□□ 0.97
CLN3-203ENST00000357806 DDX19BQ9UMR2 479 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 PA2G4Q9UQ80 394 aaKnown RBP21.11■□□□□ 0.97
CLN3-203ENST00000357806 ECM29Q5VYK3 1845 aa21.11■□□□□ 0.97
CLN3-203ENST00000357806 ATG9AQ7Z3C6 839 aa21.1■□□□□ 0.97
CLN3-203ENST00000357806 C1orf115Q9H7X2 142 aa21.1■□□□□ 0.97
CLN3-203ENST00000357806 CD209Q9NNX6 404 aa21.1■□□□□ 0.97
CLN3-203ENST00000357806 POLR2AP24928 1970 aaKnown RBP21.1■□□□□ 0.97
CLN3-203ENST00000357806 TRPM7Q96QT4 1865 aa21.1■□□□□ 0.97
CLN3-203ENST00000357806 POTEIP0CG38 1075 aa21.09■□□□□ 0.97
CLN3-203ENST00000357806 POTEJP0CG39 1038 aa21.09■□□□□ 0.97
CLN3-203ENST00000357806 IL15P40933 162 aaPredicted RBP21.09■□□□□ 0.97
CLN3-203ENST00000357806 PDE3AQ14432 1141 aa21.09■□□□□ 0.97
CLN3-203ENST00000357806 PUM3Q15397 648 aaKnown RBP21.09■□□□□ 0.97
CLN3-203ENST00000357806 RSBN1LQ6PCB5 846 aaPredicted RBP21.09■□□□□ 0.97
CLN3-203ENST00000357806 USP50Q70EL3 339 aaPredicted RBP21.09■□□□□ 0.97
CLN3-203ENST00000357806 FBXW7Q969H0 707 aa21.09■□□□□ 0.97
CLN3-203ENST00000357806 CNOT7Q9UIV1 285 aaKnown RBP21.09■□□□□ 0.97
CLN3-203ENST00000357806 COG6Q9Y2V7 657 aa21.09■□□□□ 0.97
CLN3-203ENST00000357806 PNMA6EA0A0J9YXQ4 647 aa21.08■□□□□ 0.97
CLN3-203ENST00000357806 H7C1D1 291 aa21.08■□□□□ 0.97
CLN3-203ENST00000357806 STRIP1Q5VSL9 837 aa21.08■□□□□ 0.97
CLN3-203ENST00000357806 CHADLQ6NUI6 762 aa21.08■□□□□ 0.97
CLN3-203ENST00000357806 MICALL2Q8IY33 904 aa21.08■□□□□ 0.97
CLN3-203ENST00000357806 AGBL3Q8NEM8 1001 aa21.08■□□□□ 0.97
CLN3-203ENST00000357806 MYO3BQ8WXR4 1341 aa21.08■□□□□ 0.96
CLN3-203ENST00000357806 IL1R1P14778 569 aa21.07■□□□□ 0.96
CLN3-203ENST00000357806 CHMP4BQ9H444 224 aaKnown RBP21.07■□□□□ 0.96
CLN3-203ENST00000357806 CLEC11AQ9Y240 323 aa21.07■□□□□ 0.96
CLN3-203ENST00000357806 IFIT1P09914 478 aaKnown RBP21.07■□□□□ 0.96
CLN3-203ENST00000357806 CEP126Q9P2H0 1117 aa21.07■□□□□ 0.96
CLN3-203ENST00000357806 SLC5A1P13866 664 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 FGFR2P21802 821 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 HIBADHP31937 336 aaKnown RBP21.06■□□□□ 0.96
CLN3-203ENST00000357806 GYG1P46976 350 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 ATP8B2P98198 1209 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 CAVIN4Q5BKX8 364 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 DACT2Q5SW24 774 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 TTLL5Q6EMB2 1281 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 VPS37DQ86XT2 251 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 LPIN2Q92539 896 aa21.06■□□□□ 0.96
CLN3-203ENST00000357806 GTF2IP78347 998 aa21.05■□□□□ 0.96
CLN3-203ENST00000357806 POLA2Q14181 598 aa21.05■□□□□ 0.96
CLN3-203ENST00000357806 C20orf194Q5TEA3 1177 aa21.05■□□□□ 0.96
CLN3-203ENST00000357806 SSH3Q8TE77 659 aa21.05■□□□□ 0.96
CLN3-203ENST00000357806 FAM84BQ96KN1 310 aaPredicted RBP21.05■□□□□ 0.96
CLN3-203ENST00000357806 SHTN1A0MZ66 631 aa21.04■□□□□ 0.96
CLN3-203ENST00000357806 HSPA6P17066 643 aa21.04■□□□□ 0.96
CLN3-203ENST00000357806 ATP2B3Q16720 1220 aa21.04■□□□□ 0.96
CLN3-203ENST00000357806 CEP85Q6P2H3 762 aa21.03■□□□□ 0.96
CLN3-203ENST00000357806 TRPM4Q8TD43 1214 aa21.03■□□□□ 0.96
CLN3-203ENST00000357806 GMLQ99445 158 aa21.03■□□□□ 0.96
CLN3-203ENST00000357806 USP17L8P0C7I0 530 aa21.02■□□□□ 0.96
CLN3-203ENST00000357806 RRP1P56182 461 aaKnown RBP21.02■□□□□ 0.96
CLN3-203ENST00000357806 G3BP1Q13283 466 aaKnown RBP eCLIP21.02■□□□□ 0.96
CLN3-203ENST00000357806 FBXO33Q7Z6M2 555 aa21.02■□□□□ 0.96
CLN3-203ENST00000357806 TDRD7Q8NHU6 1098 aaKnown RBP21.02■□□□□ 0.96
CLN3-203ENST00000357806 SASH1O94885 1247 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 SAMD7Q7Z3H4 446 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 MXD3Q9BW11 206 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 ZBTB40Q9NUA8 1239 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 ZNF280AP59817 542 aaPredicted RBP21.01■□□□□ 0.95
CLN3-203ENST00000357806 FKBP1AP62942 108 aaKnown RBP21.01■□□□□ 0.95
CLN3-203ENST00000357806 KIF4BQ2VIQ3 1234 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 TBC1D10BQ4KMP7 808 aaPredicted RBP21.01■□□□□ 0.95
CLN3-203ENST00000357806 OGFOD1Q8N543 542 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 AKAP2Q9Y2D5 859 aa21.01■□□□□ 0.95
CLN3-203ENST00000357806 FAM205AQ6ZU69 1335 aa21■□□□□ 0.95
CLN3-203ENST00000357806 FRAT2O75474 233 aaPredicted RBP21■□□□□ 0.95
CLN3-203ENST00000357806 MMP14P50281 582 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms