RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 ZNF296Q8WUU4 475 aaPredicted RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 COL17A1Q9UMD9 1497 aaPredicted RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 TGFBR3LH3BV60 316 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 TLR3O15455 904 aaKnown RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 KLF4O43474 513 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 SSBP05455 408 aaKnown RBP eCLIP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 GBP2P32456 591 aaPredicted RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 DHX9Q08211 1270 aaKnown RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 POU4F2Q12837 409 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 BTLAQ7Z6A9 289 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 NIFKQ9BYG3 293 aaKnown RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 TNKS2Q9H2K2 1166 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 GPAMQ9HCL2 828 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 FAM8A1Q9UBU6 413 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 SALL4Q9UJQ4 1053 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 ESYT3A0FGR9 886 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 B2RBV5 119 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 TARSP26639 723 aaKnown RBP2.36□□□□□ -2.03
BRCA1-202ENST00000354071 MPRIPQ6WCQ1 1025 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 CERS3Q8IU89 383 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 KIAA0825Q8IV33 1275 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 SH3TC2Q8TF17 1288 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 KCNB2Q92953 911 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 CNTNAP3BQ96NU0 1288 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 DNAJC7Q99615 494 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 CNTNAP3Q9BZ76 1288 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 FANCLQ9NW38 375 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 LEMD3Q9Y2U8 911 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 CHMP3Q9Y3E7 222 aa2.36□□□□□ -2.03
BRCA1-202ENST00000354071 hCG_2014768A0A024R1R8 64 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 PPFIA3O75145 1194 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 NCLP19338 710 aaKnown RBP2.35□□□□□ -2.03
BRCA1-202ENST00000354071 EIF4A3P38919 411 aaKnown RBP2.35□□□□□ -2.03
BRCA1-202ENST00000354071 AMPD3Q01432 767 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 ABCB6Q9NP58 842 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 UTP3Q9NQZ2 479 aaKnown RBP eCLIP2.35□□□□□ -2.037e-6■■■■■ 74.5
BRCA1-202ENST00000354071 AKAP2Q9Y2D5 859 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 COL4A3BPQ9Y5P4 624 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 AXIN1O15169 862 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 XYLBO75191 536 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 SASH3O75995 380 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 GARTP22102 1010 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 GRIA4P48058 902 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 BNC2Q6ZN30 1099 aaPredicted RBP2.35□□□□□ -2.03
BRCA1-202ENST00000354071 RHBDD1Q8TEB9 315 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 SNX29Q8TEQ0 813 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 NLRP3Q96P20 1036 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 BCL11AQ9H165 835 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 TTLL8A6PVC2 850 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 PF4P02776 101 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 CANXP27824 592 aaKnown RBP2.35□□□□□ -2.03
BRCA1-202ENST00000354071 TYRO3Q06418 890 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 SLC27A3Q5K4L6 730 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 TREML4Q6UXN2 200 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 RUFY4Q6ZNE9 571 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 BICDL1Q6ZP65 573 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 GOLM1Q8NBJ4 401 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 DEPDC7Q96QD5 511 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 TSEN34Q9BSV6 310 aaKnown RBP2.35□□□□□ -2.03
BRCA1-202ENST00000354071 DNAJC25Q9H1X3 360 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 PCDH12Q9NPG4 1184 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 GABBR1Q9UBS5 961 aa2.35□□□□□ -2.03
BRCA1-202ENST00000354071 A0A1W2PP55 124 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SMAD7O15105 426 aaKnown RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SQSTM1Q13501 440 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SPRED3Q2MJR0 410 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ARSJQ5FYB0 599 aaPredicted RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 RASGRP4Q8TDF6 673 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ARMC5Q96C12 935 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ZNF837Q96EG3 531 aaPredicted RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 RHOVQ96L33 236 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ZFATQ9P243 1243 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PCDHB5Q9Y5E4 795 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 TRIM37O94972 964 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ARHGEF15O94989 841 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 CDK8P49336 464 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 RAB33AQ14088 237 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SAMD5Q5TGI4 173 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SPATC1Q76KD6 591 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 CKAP2LQ8IYA6 745 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 CCDC155Q8N6L0 562 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SHDQ96IW2 340 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ZIC5Q96T25 663 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 OXCT2Q9BYC2 517 aaPredicted RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ANTXR1Q9H6X2 564 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 RUBCNLQ9H714 662 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PGPEP1Q9NXJ5 209 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PFDN2Q9UHV9 154 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SUGT1Q9Y2Z0 365 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 ENC1O14682 589 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 MAP4K4O95819 1239 aaPredicted RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 XRCC5P13010 732 aaKnown RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 TFE3P19532 575 aaPredicted RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 FAAP100Q0VG06 881 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 SEZ6Q53EL9 994 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PRPF40BQ6NWY9 871 aaKnown RBP2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PGBD3Q8N328 593 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 PHC3Q8NDX5 983 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 TTC16Q8NEE8 873 aa2.34□□□□□ -2.03
BRCA1-202ENST00000354071 TMEM74Q96NL1 305 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms