RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 CAVIN2O95810 425 aa26.18■■□□□ 1.78
TRIM28-202ENST00000341753 ME1P48163 572 aa26.18■■□□□ 1.78
TRIM28-202ENST00000341753 DDX46Q7L014 1031 aaKnown RBP26.18■■□□□ 1.78
TRIM28-202ENST00000341753 FSIP1Q8NA03 581 aa26.18■■□□□ 1.78
TRIM28-202ENST00000341753 CTDNEP1O95476 244 aa26.17■■□□□ 1.78
TRIM28-202ENST00000341753 GABPB1Q06547 395 aaPredicted RBP26.17■■□□□ 1.78
TRIM28-202ENST00000341753 NSUN7Q8NE18 718 aaKnown RBP26.17■■□□□ 1.78
TRIM28-202ENST00000341753 HDAC5Q9UQL6 1122 aa26.17■■□□□ 1.78
TRIM28-202ENST00000341753 PTPDC1A2A3K4 754 aa26.17■■□□□ 1.78
TRIM28-202ENST00000341753 DDX58O95786 925 aaKnown RBP26.17■■□□□ 1.78
TRIM28-202ENST00000341753 RCOR1Q9UKL0 485 aa26.17■■□□□ 1.78
TRIM28-202ENST00000341753 JCADQ9P266 1359 aa26.17■■□□□ 1.78
TRIM28-202ENST00000341753 ZNF609O15014 1411 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 A0A0G2JLW4 131 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 TFCP2Q12800 502 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 KRT222Q8N1A0 295 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 NEMFO60524 1076 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 CHST3Q7LGC8 479 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 LRRN4CLQ8ND94 238 aa26.16■■□□□ 1.78
TRIM28-202ENST00000341753 IFNL2Q8IZJ0 200 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 ANO10Q9NW15 660 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 OVOS2A0A0G2JMS6 1433 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 ATP5J2-PTCD1G3V325 749 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 CTAGE5O15320 804 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 PTCD1O75127 700 aaKnown RBP26.15■■□□□ 1.78
TRIM28-202ENST00000341753 SMARCC2Q8TAQ2 1214 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 ALS2Q96Q42 1657 aa26.15■■□□□ 1.78
TRIM28-202ENST00000341753 SIPA1L3O60292 1781 aaPredicted RBP26.14■■□□□ 1.78
TRIM28-202ENST00000341753 CAMTA1Q9Y6Y1 1673 aa26.14■■□□□ 1.78
TRIM28-202ENST00000341753 NEURL1BA8MQ27 555 aa26.14■■□□□ 1.78
TRIM28-202ENST00000341753 NBPF11Q86T75 865 aa26.14■■□□□ 1.77
TRIM28-202ENST00000341753 CEP57L1Q8IYX8 460 aa26.14■■□□□ 1.77
TRIM28-202ENST00000341753 ENGASEQ8NFI3 743 aa26.14■■□□□ 1.77
TRIM28-202ENST00000341753 FMNL2Q96PY5 1086 aa26.14■■□□□ 1.77
TRIM28-202ENST00000341753 DBNDD2Q9BQY9 259 aa26.14■■□□□ 1.77
TRIM28-202ENST00000341753 A0A1B0GVL5 298 aa26.13■■□□□ 1.77
TRIM28-202ENST00000341753 FAM160A1Q05DH4 1040 aa26.13■■□□□ 1.77
TRIM28-202ENST00000341753 TERF2Q15554 542 aa26.13■■□□□ 1.77
TRIM28-202ENST00000341753 ERO1AQ96HE7 468 aa26.13■■□□□ 1.77
TRIM28-202ENST00000341753 U3KPZ7 1027 aaPredicted RBP26.13■■□□□ 1.77
TRIM28-202ENST00000341753 C5P01031 1676 aa26.13■■□□□ 1.77
TRIM28-202ENST00000341753 TTC5Q8N0Z6 440 aa26.13■■□□□ 1.77
TRIM28-202ENST00000341753 UTYO14607 1347 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 PFKFB2O60825 505 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 SLU7O95391 586 aaKnown RBP26.12■■□□□ 1.77
TRIM28-202ENST00000341753 TNNI3KQ59H18 835 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 SDF4Q9BRK5 362 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 FPGT-TNNI3KV9GXZ4 949 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 STRCP1A6NGW2 1772 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 SMC2O95347 1197 aa26.12■■□□□ 1.77
TRIM28-202ENST00000341753 ILDR1Q86SU0 546 aaPredicted RBP26.12■■□□□ 1.77
TRIM28-202ENST00000341753 ERICH4A6NGS2 130 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 BIN1O00499 593 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 GCKRQ14397 625 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 OTUD7BQ6GQQ9 843 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 ZNF446Q9NWS9 450 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 KIF1AQ12756 1690 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 ATP5JP18859 108 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 ERCC6LQ2NKX8 1250 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 MCMDC2Q4G0Z9 681 aa26.11■■□□□ 1.77
TRIM28-202ENST00000341753 DPCR1Q3MIW9 517 aa26.1■■□□□ 1.77
TRIM28-202ENST00000341753 NAA16Q6N069 864 aaPredicted RBP26.1■■□□□ 1.77
TRIM28-202ENST00000341753 SYT10Q6XYQ8 523 aa26.1■■□□□ 1.77
TRIM28-202ENST00000341753 ZBTB22O15209 634 aa26.1■■□□□ 1.77
TRIM28-202ENST00000341753 NEXNQ0ZGT2 675 aa26.1■■□□□ 1.77
TRIM28-202ENST00000341753 E4F1Q66K89 784 aaPredicted RBP26.1■■□□□ 1.77
TRIM28-202ENST00000341753 TMC6Q7Z403 805 aa26.1■■□□□ 1.77
TRIM28-202ENST00000341753 ANKRD13DQ6ZTN6 518 aa26.09■■□□□ 1.77
TRIM28-202ENST00000341753 PCDHA7Q9UN72 937 aa26.09■■□□□ 1.77
TRIM28-202ENST00000341753 XPO4Q9C0E2 1151 aaKnown RBP26.09■■□□□ 1.77
TRIM28-202ENST00000341753 IFNKQ9P0W0 207 aa26.09■■□□□ 1.77
TRIM28-202ENST00000341753 CABP4P57796 275 aa26.08■■□□□ 1.77
TRIM28-202ENST00000341753 NDUFA8P51970 172 aa26.08■■□□□ 1.77
TRIM28-202ENST00000341753 GORABQ5T7V8 394 aa26.08■■□□□ 1.77
TRIM28-202ENST00000341753 DHX32Q7L7V1 743 aaKnown RBP26.08■■□□□ 1.77
TRIM28-202ENST00000341753 UBE3BQ7Z3V4 1068 aa26.08■■□□□ 1.77
TRIM28-202ENST00000341753 LRP10Q7Z4F1 713 aa26.08■■□□□ 1.77
TRIM28-202ENST00000341753 ZNF396Q96N95 335 aaPredicted RBP26.08■■□□□ 1.77
TRIM28-202ENST00000341753 METTL22Q9BUU2 404 aaPredicted RBP26.08■■□□□ 1.77
TRIM28-202ENST00000341753 SNRPA1P09661 255 aaKnown RBP26.08■■□□□ 1.76
TRIM28-202ENST00000341753 ARMCX5Q6P1M9 558 aa26.08■■□□□ 1.76
TRIM28-202ENST00000341753 PPP1R13BQ96KQ4 1090 aa26.08■■□□□ 1.76
TRIM28-202ENST00000341753 ISM2Q6H9L7 571 aa26.07■■□□□ 1.76
TRIM28-202ENST00000341753 LLPHQ9BRT6 129 aaKnown RBP26.07■■□□□ 1.76
TRIM28-202ENST00000341753 DCAF5Q96JK2 942 aa26.07■■□□□ 1.76
TRIM28-202ENST00000341753 TAOK2Q9UL54 1235 aa26.07■■□□□ 1.76
TRIM28-202ENST00000341753 PTPN12Q05209 780 aaKnown RBP26.06■■□□□ 1.76
TRIM28-202ENST00000341753 FMR1NBQ8N0W7 255 aaPredicted RBP26.06■■□□□ 1.76
TRIM28-202ENST00000341753 GPHNQ9NQX3 736 aaPredicted RBP26.06■■□□□ 1.76
TRIM28-202ENST00000341753 CADPS2Q86UW7 1296 aa26.06■■□□□ 1.76
TRIM28-202ENST00000341753 MRPS27Q92552 414 aaKnown RBP26.06■■□□□ 1.76
TRIM28-202ENST00000341753 NAT10Q9H0A0 1025 aaKnown RBP26.06■■□□□ 1.76
TRIM28-202ENST00000341753 SCN11AQ9UI33 1791 aa26.05■■□□□ 1.76
TRIM28-202ENST00000341753 POLR3DP05423 398 aaPredicted RBP26.05■■□□□ 1.76
TRIM28-202ENST00000341753 SPATA31A3Q5VYP0 1347 aa26.05■■□□□ 1.76
TRIM28-202ENST00000341753 TNS3Q68CZ2 1445 aa26.05■■□□□ 1.76
TRIM28-202ENST00000341753 GSDMDP57764 484 aa26.05■■□□□ 1.76
TRIM28-202ENST00000341753 ADAMTS7Q9UKP4 1686 aa26.05■■□□□ 1.76
TRIM28-202ENST00000341753 GOLIM4O00461 696 aa26.04■■□□□ 1.76
TRIM28-202ENST00000341753 RAB11FIP4Q86YS3 637 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms