RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 KAZALD1Q96I82 304 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 MRVI1Q9Y6F6 885 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 IFIT3O14879 490 aaKnown RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 SLC3A2P08195 630 aaKnown RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 PDE4CQ08493 712 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 TOB2Q14106 344 aaPredicted RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 RAI14Q9P0K7 980 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 RPAP1Q9BWH6 1393 aaPredicted RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 DHX8Q14562 1220 aaKnown RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 UVSSAQ2YD98 709 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 SAMD1Q6SPF0 538 aaPredicted RBP13.9□□□□□ -0.18
USP1-201ENST00000339950 BCL2L12Q9HB09 334 aa13.9□□□□□ -0.18
USP1-201ENST00000339950 CCDC69A6NI79 296 aa13.9□□□□□ -0.19
USP1-201ENST00000339950 STX17P56962 302 aa13.9□□□□□ -0.19
USP1-201ENST00000339950 ARHGEF28Q8N1W1 1705 aaKnown RBP13.89□□□□□ -0.19
USP1-201ENST00000339950 E7EWF7 191 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 PHKG2P15735 406 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 PLCD3Q8N3E9 789 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 MNS1Q8NEH6 495 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 PGBD1Q96JS3 809 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 CYP27B1O15528 508 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 URI1O94763 535 aaPredicted RBP13.89□□□□□ -0.19
USP1-201ENST00000339950 ATP2B3Q16720 1220 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 NAT10Q9H0A0 1025 aaKnown RBP13.89□□□□□ -0.19
USP1-201ENST00000339950 NAPBQ9H115 298 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 RNF216Q9NWF9 866 aaPredicted RBP13.89□□□□□ -0.19
USP1-201ENST00000339950 DENND2AQ9ULE3 1009 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 XAGE2Q96GT9 111 aa13.89□□□□□ -0.19
USP1-201ENST00000339950 AFMP43652 599 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 ZNF827Q17R98 1081 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 SMIM5Q71RC9 77 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 ALG1Q9BT22 464 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 ERICH2A1L162 156 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 DHX16O60231 1041 aaKnown RBP13.88□□□□□ -0.19
USP1-201ENST00000339950 SAFBQ15424 915 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP1-201ENST00000339950 TMEM67Q5HYA8 995 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 KBTBD3Q8NAB2 608 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 GTF3C6Q969F1 213 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 PTPRUQ92729 1446 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 MYO5BQ9ULV0 1848 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 POLR3GO15318 223 aaPredicted RBP13.88□□□□□ -0.19
USP1-201ENST00000339950 RANBP6O60518 1105 aaKnown RBP13.88□□□□□ -0.19
USP1-201ENST00000339950 HSPD1P10809 573 aaKnown RBP13.88□□□□□ -0.19
USP1-201ENST00000339950 CACTINQ8WUQ7 758 aaKnown RBP13.88□□□□□ -0.19
USP1-201ENST00000339950 CLIC6Q96NY7 704 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 ANO10Q9NW15 660 aa13.88□□□□□ -0.19
USP1-201ENST00000339950 GOLGA8AA7E2F4 631 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 SFPQP23246 707 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP1-201ENST00000339950 CTDSPL2Q05D32 466 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 OLFM4Q6UX06 510 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 STOX1Q6ZVD7 989 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 EEF2KMTQ96G04 330 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 VGLL3A8MV65 326 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 METAP2P50579 478 aaKnown RBP eCLIP13.87□□□□□ -0.19
USP1-201ENST00000339950 CEP135Q66GS9 1140 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 HMG20BQ9P0W2 317 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 ASAP1Q9ULH1 1129 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 KCNJ14Q9UNX9 436 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 CLIC4Q9Y696 253 aa13.87□□□□□ -0.19
USP1-201ENST00000339950 RNF113AO15541 343 aaKnown RBP13.87□□□□□ -0.19
USP1-201ENST00000339950 ZNF75DP51815 510 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 ST3GAL1Q11201 340 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 OSBP2Q969R2 916 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 SIGLEC1Q9BZZ2 1709 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 EYA2O00167 538 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 STX1AQ16623 288 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 LRRFIP1Q32MZ4 808 aaKnown RBP13.86□□□□□ -0.19
USP1-201ENST00000339950 SALL3Q9BXA9 1300 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 KDRP35968 1356 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 GPAA1O43292 621 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 SYT10Q6XYQ8 523 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 TRMT44Q8IYL2 757 aaKnown RBP13.86□□□□□ -0.19
USP1-201ENST00000339950 MRPS27Q92552 414 aaKnown RBP13.86□□□□□ -0.19
USP1-201ENST00000339950 SIRT1Q96EB6 747 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 UIMC1Q96RL1 719 aa13.86□□□□□ -0.19
USP1-201ENST00000339950 M0R2C6 588 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 SPTLC2O15270 562 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 FGAP02671 866 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 SCARF1Q14162 830 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 CNNM3Q8NE01 707 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 PCMTD1Q96MG8 357 aaPredicted RBP13.85□□□□□ -0.19
USP1-201ENST00000339950 DNAI1Q9UI46 699 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 IL15P40933 162 aaPredicted RBP13.85□□□□□ -0.19
USP1-201ENST00000339950 MYRIPQ8NFW9 859 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 DCAF5Q96JK2 942 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 PLIN2Q99541 437 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.85□□□□□ -0.19
USP1-201ENST00000339950 CLSTN2Q9H4D0 955 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 UBE2Q2LH0YL09 131 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 ATP5JP18859 108 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 IARSP41252 1262 aaKnown RBP13.85□□□□□ -0.19
USP1-201ENST00000339950 CCDC144BQ3MJ40 725 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 CTNNA3Q9UI47 895 aa13.85□□□□□ -0.19
USP1-201ENST00000339950 FAM170AA1A519 330 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 ERCC3P19447 782 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 PUS7LQ9H0K6 701 aaKnown RBP13.84□□□□□ -0.19
USP1-201ENST00000339950 ARMT1Q9H993 441 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 MAPK8IP1Q9UQF2 711 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 OVOS2A0A0J9YW53 1432 aa13.84□□□□□ -0.19
USP1-201ENST00000339950 OVOS2Q6IE36 1432 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms