RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PA2G4Q9UQ80 394 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 RBM8AQ9Y5S9 174 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 TTC41PQ6P2S7 1318 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 PPP1R12BO60237 982 aaPredicted RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 SYKP43405 635 aa13.14□□□□□ -0.31
VPS39-201ENST00000318006 MTIF2P46199 727 aaKnown RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 ZNF444Q8N0Y2 327 aaPredicted RBP13.14□□□□□ -0.31
VPS39-201ENST00000318006 HDXQ7Z353 690 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 ORC3Q9UBD5 711 aaPredicted RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 TMEM67Q5HYA8 995 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 KCNG4Q8TDN1 519 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 RPGRQ92834 1020 aaKnown RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 BRF1Q92994 677 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 DCAF5Q96JK2 942 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 CTAGE1Q96RT6 745 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 SBNO1A3KN83 1393 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 ATP2B3Q16720 1220 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 CATIPQ7Z7H3 387 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 ZGPATQ8N5A5 531 aaKnown RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 NECAB1Q8N987 351 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 NSRP1Q9H0G5 558 aaKnown RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 UBE4AQ14139 1066 aa13.13□□□□□ -0.31
VPS39-201ENST00000318006 CWF19L2Q2TBE0 894 aaKnown RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.13□□□□□ -0.31
VPS39-201ENST00000318006 RNMTO43148 476 aaKnown RBP13.12□□□□□ -0.31
VPS39-201ENST00000318006 PHACTR2O75167 634 aa13.12□□□□□ -0.31
VPS39-201ENST00000318006 ZCCHC11Q5TAX3 1644 aaKnown RBP13.12□□□□□ -0.31
VPS39-201ENST00000318006 IL2RBP14784 551 aa13.12□□□□□ -0.31
VPS39-201ENST00000318006 CYLC1P35663 651 aaPredicted RBP13.12□□□□□ -0.31
VPS39-201ENST00000318006 CCDC152Q4G0S7 254 aa13.12□□□□□ -0.31
VPS39-201ENST00000318006 BABAM1Q9NWV8 329 aa13.12□□□□□ -0.31
VPS39-201ENST00000318006 TMCO5BA8MYB1 307 aa13.12□□□□□ -0.31
VPS39-201ENST00000318006 MPHOSPH10O00566 681 aaKnown RBP13.12□□□□□ -0.31
VPS39-201ENST00000318006 BLMP54132 1417 aaPredicted RBP13.12□□□□□ -0.31
VPS39-201ENST00000318006 MCMDC2Q4G0Z9 681 aa13.12□□□□□ -0.31
VPS39-201ENST00000318006 PYM1Q9BRP8 204 aaKnown RBP13.12□□□□□ -0.31
VPS39-201ENST00000318006 MFSD6Q6ZSS7 791 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 MICU3Q86XE3 530 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 FAM114A1Q8IWE2 563 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 SLF2Q8IX21 1173 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS39-201ENST00000318006 PREX2Q70Z35 1606 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 CHL1O00533 1208 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 EVCP57679 992 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 C6orf163Q5TEZ5 329 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 CRACR2BQ8N4Y2 399 aaPredicted RBP13.11□□□□□ -0.31
VPS39-201ENST00000318006 ZNF76P36508 570 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 SPAG1Q07617 926 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 ARFGAP2Q8N6H7 521 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 CCDC114Q96M63 670 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 LDHCP07864 332 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 METAP2P50579 478 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS39-201ENST00000318006 G2E3Q7L622 706 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 FBF1Q8TES7 1133 aa13.11□□□□□ -0.31
VPS39-201ENST00000318006 A0A1B0GUA9 196 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 VGLL3A8MV65 326 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 AKR1B10O60218 316 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 SSR1P43307 286 aaKnown RBP13.1□□□□□ -0.31
VPS39-201ENST00000318006 ANKS4BQ8N8V4 417 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 FAM76AQ8TAV0 307 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 DDX21Q9NR30 783 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS39-201ENST00000318006 RSRC1Q96IZ7 334 aaKnown RBP13.1□□□□□ -0.31
VPS39-201ENST00000318006 TCEANC2Q96MN5 208 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 RNF123Q5XPI4 1314 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 LMOD1P29536 600 aaPredicted RBP13.1□□□□□ -0.31
VPS39-201ENST00000318006 NEO1Q92859 1461 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 ZNF500O60304 480 aaPredicted RBP13.1□□□□□ -0.31
VPS39-201ENST00000318006 CCDC155Q8N6L0 562 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 PPM1EQ8WY54 764 aa13.1□□□□□ -0.31
VPS39-201ENST00000318006 NLRP5P59047 1200 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 CCDC6Q16204 474 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 TMEM132AQ24JP5 1023 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 CDC42BPAQ5VT25 1732 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 CCDC194A0A1B0GVG4 234 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 PPP2R3AQ06190 1150 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 NMIQ13287 307 aaPredicted RBP13.09□□□□□ -0.31
VPS39-201ENST00000318006 KLF18A0A0U1RQI7 1052 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 SPATA24Q86W54 205 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 CCDC144CPQ8IYA2 1237 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 PUF60Q9UHX1 559 aaKnown RBP13.09□□□□□ -0.31
VPS39-201ENST00000318006 C6orf229H3BNL8 230 aa13.09□□□□□ -0.31
VPS39-201ENST00000318006 SBNO2Q9Y2G9 1366 aa13.08□□□□□ -0.31
VPS39-201ENST00000318006 PPFIA3O75145 1194 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 HOXB7P09629 217 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 POTEJP0CG39 1038 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 CHMLP26374 656 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 NOP2P46087 812 aaKnown RBP13.08□□□□□ -0.32
VPS39-201ENST00000318006 PDE4BQ07343 736 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 SPTY2D1Q68D10 685 aaPredicted RBP13.08□□□□□ -0.32
VPS39-201ENST00000318006 SCLT1Q96NL6 688 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 BCL2L12Q9HB09 334 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 IFNKQ9P0W0 207 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 BAG3O95817 575 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 RHOXF2BP0C7M4 288 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 TRIM21P19474 475 aaKnown RBP13.08□□□□□ -0.32
VPS39-201ENST00000318006 KIF5BP33176 963 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 IFI16Q16666 785 aaKnown RBP13.08□□□□□ -0.32
VPS39-201ENST00000318006 RAB11FIP4Q86YS3 637 aa13.08□□□□□ -0.32
VPS39-201ENST00000318006 CEP63Q96MT8 703 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms