RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 C9orf78Q9NZ63 289 aaPredicted RBP24.75■■□□□ 1.55
LIME1-201ENST00000309546 ZNF804BA4D1E1 1349 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 ZNF609O15014 1411 aa24.75■■□□□ 1.55
LIME1-201ENST00000309546 ZNF646O15015 1829 aaPredicted RBP24.75■■□□□ 1.55
LIME1-201ENST00000309546 ADM5C9JUS6 153 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 E9PSI1 815 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 CHRNDQ07001 517 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 SAPCD2Q86UD0 394 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 SRCIN1Q9C0H9 1055 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 GGA3Q9NZ52 723 aa24.74■■□□□ 1.55
LIME1-201ENST00000309546 KLRK1P26718 216 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 EPHA10Q5JZY3 1008 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 LMBR1LQ6UX01 489 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 TXNRD3Q86VQ6 643 aa24.73■■□□□ 1.55
LIME1-201ENST00000309546 ASTN2O75129 1339 aaPredicted RBP24.72■■□□□ 1.55
LIME1-201ENST00000309546 ALDH1L1O75891 902 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 USP17L8P0C7I0 530 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 COA1Q9GZY4 146 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 WBP1LQ9NX94 342 aa24.72■■□□□ 1.55
LIME1-201ENST00000309546 CTCFP49711 727 aaPredicted RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 ZNF280AP59817 542 aaPredicted RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 MAP2K1Q02750 393 aaPredicted RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 TAF7LQ5H9L4 462 aa24.71■■□□□ 1.55
LIME1-201ENST00000309546 MRPL50Q8N5N7 158 aaKnown RBP24.71■■□□□ 1.55
LIME1-201ENST00000309546 MXD3Q9BW11 206 aa24.71■■□□□ 1.55
LIME1-201ENST00000309546 CCDC57Q2TAC2 916 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 SULF1Q8IWU6 871 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 HELBQ8NG08 1087 aaPredicted RBP24.7■■□□□ 1.54
LIME1-201ENST00000309546 GMLQ99445 158 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 MYOZ2Q9NPC6 264 aa24.7■■□□□ 1.54
LIME1-201ENST00000309546 TAF5LO75529 589 aa24.69■■□□□ 1.54
LIME1-201ENST00000309546 SCARF1Q14162 830 aa24.69■■□□□ 1.54
LIME1-201ENST00000309546 DACT2Q5SW24 774 aa24.69■■□□□ 1.54
LIME1-201ENST00000309546 ANGEL2Q5VTE6 544 aaKnown RBP24.69■■□□□ 1.54
LIME1-201ENST00000309546 ZNF594Q96JF6 807 aaPredicted RBP24.69■■□□□ 1.54
LIME1-201ENST00000309546 SNAP23O00161 211 aa24.68■■□□□ 1.54
LIME1-201ENST00000309546 AOC2O75106 756 aa24.68■■□□□ 1.54
LIME1-201ENST00000309546 SLFN5Q08AF3 891 aa24.68■■□□□ 1.54
LIME1-201ENST00000309546 MYO3BQ8WXR4 1341 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 HUNKP57058 714 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 STRIP1Q5VSL9 837 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 CDCA7LQ96GN5 454 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 SUCLG2Q96I99 432 aa24.67■■□□□ 1.54
LIME1-201ENST00000309546 CAPN15O75808 1086 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 LBX1P52954 281 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 SSH1Q8WYL5 1049 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 HHIPL1Q96JK4 782 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 BEGAINQ9BUH8 593 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 GBA2Q9HCG7 927 aaPredicted RBP24.66■■□□□ 1.54
LIME1-201ENST00000309546 CNNM1Q9NRU3 951 aa24.66■■□□□ 1.54
LIME1-201ENST00000309546 PTPRCP08575 1304 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 PLIN1O60240 522 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 NBPF7P0C2Y1 421 aaPredicted RBP24.65■■□□□ 1.54
LIME1-201ENST00000309546 TTLL5Q6EMB2 1281 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 LDHAL6AQ6ZMR3 332 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 OGFOD1Q8N543 542 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 PRDM10Q9NQV6 1147 aa24.65■■□□□ 1.54
LIME1-201ENST00000309546 GTF2IP78347 998 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 C2orf69Q8N8R5 385 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 CDCA5Q96FF9 252 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 CD209Q9NNX6 404 aa24.64■■□□□ 1.54
LIME1-201ENST00000309546 CCER2I3L3R5 266 aa24.63■■□□□ 1.53
LIME1-201ENST00000309546 HSPA8P11142 646 aaKnown RBP24.63■■□□□ 1.53
LIME1-201ENST00000309546 SCAF8Q9UPN6 1271 aaKnown RBP24.63■■□□□ 1.53
LIME1-201ENST00000309546 MAP2K2P36507 400 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 KIAA0825Q8IV33 1275 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 KAZALD1Q96I82 304 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 SMC4Q9NTJ3 1288 aa24.62■■□□□ 1.53
LIME1-201ENST00000309546 IRS2Q9Y4H2 1338 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 NBPF9Q3BBW0 867 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 ZNF804AQ7Z570 1209 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 UTYO14607 1347 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 PITPNM2Q9BZ72 1349 aa24.61■■□□□ 1.53
LIME1-201ENST00000309546 SASH1O94885 1247 aa24.6■■□□□ 1.53
LIME1-201ENST00000309546 BICC1Q9H694 974 aaKnown RBP24.6■■□□□ 1.53
LIME1-201ENST00000309546 ALDH1L2Q3SY69 923 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 RGMBQ6NW40 437 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 C15orf52Q6ZUT6 534 aaKnown RBP24.59■■□□□ 1.53
LIME1-201ENST00000309546 TSKSQ9UJT2 592 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 HDAC9Q9UKV0 1011 aa24.59■■□□□ 1.53
LIME1-201ENST00000309546 WNT10BO00744 389 aa24.58■■□□□ 1.53
LIME1-201ENST00000309546 NOGQ13253 232 aa24.58■■□□□ 1.53
LIME1-201ENST00000309546 PUS3Q9BZE2 481 aaKnown RBP24.58■■□□□ 1.53
LIME1-201ENST00000309546 PAPPA2Q9BXP8 1791 aa24.57■■□□□ 1.52
LIME1-201ENST00000309546 JAG2Q9Y219 1238 aa24.57■■□□□ 1.52
LIME1-201ENST00000309546 ZNF157P51786 506 aaPredicted RBP24.56■■□□□ 1.52
LIME1-201ENST00000309546 BRPF1P55201 1214 aaPredicted RBP24.56■■□□□ 1.52
LIME1-201ENST00000309546 PRAMEF18Q5VWM3 479 aa24.56■■□□□ 1.52
LIME1-201ENST00000309546 ANKRD44Q8N8A2 993 aa24.56■■□□□ 1.52
LIME1-201ENST00000309546 ZIC5Q96T25 663 aa24.56■■□□□ 1.52
LIME1-201ENST00000309546 F8W031 263 aaPredicted RBP24.55■■□□□ 1.52
LIME1-201ENST00000309546 IL1R1P14778 569 aa24.55■■□□□ 1.52
LIME1-201ENST00000309546 RABL6Q3YEC7 729 aaPredicted RBP24.55■■□□□ 1.52
LIME1-201ENST00000309546 TRMT2AQ8IZ69 625 aaKnown RBP24.55■■□□□ 1.52
LIME1-201ENST00000309546 CERS5Q8N5B7 392 aa24.55■■□□□ 1.52
LIME1-201ENST00000309546 FAM155AB1AL88 458 aaPredicted RBP24.54■■□□□ 1.52
LIME1-201ENST00000309546 MMP14P50281 582 aa24.54■■□□□ 1.52
LIME1-201ENST00000309546 CCDC102AQ96A19 550 aa24.54■■□□□ 1.52
LIME1-201ENST00000309546 ECM29Q5VYK3 1845 aa24.54■■□□□ 1.52
LIME1-201ENST00000309546 UBE4AQ14139 1066 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms