RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 C20orf204Q6ZNR8 217 aa7.53□□□□□ -1.2
CCDC54-201ENST00000261058 FAM35AQ86V20 835 aa7.53□□□□□ -1.2
CCDC54-201ENST00000261058 SPACA7Q96KW9 195 aa7.53□□□□□ -1.2
CCDC54-201ENST00000261058 ABCB6Q9NP58 842 aa7.53□□□□□ -1.2
CCDC54-201ENST00000261058 STARD13Q9Y3M8 1113 aa7.53□□□□□ -1.2
CCDC54-201ENST00000261058 OIP5O43482 229 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 NXPE4Q6UWF7 544 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 HFE2Q6ZVN8 426 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 C3orf58Q8NDZ4 430 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 ANKRD24Q8TF21 1146 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 NXPE3Q969Y0 559 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 HHIPQ96QV1 700 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 RASSF4Q9H2L5 321 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 IGFLR1Q9H665 355 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 FAM8A1Q9UBU6 413 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 TRAK1Q9UPV9 953 aa7.52□□□□□ -1.2
CCDC54-201ENST00000261058 GADD45BO75293 160 aaPredicted RBP7.52□□□□□ -1.21
CCDC54-201ENST00000261058 GHRHP01286 108 aa7.52□□□□□ -1.21
CCDC54-201ENST00000261058 EIF2AK2P19525 551 aaKnown RBP7.52□□□□□ -1.21
CCDC54-201ENST00000261058 EIF4BP23588 611 aaKnown RBP7.52□□□□□ -1.21
CCDC54-201ENST00000261058 ATP11AP98196 1134 aa7.52□□□□□ -1.21
CCDC54-201ENST00000261058 PLD4Q96BZ4 506 aa7.52□□□□□ -1.21
CCDC54-201ENST00000261058 CRELD1Q96HD1 420 aa7.52□□□□□ -1.21
CCDC54-201ENST00000261058 BCL11AQ9H165 835 aa7.52□□□□□ -1.21
CCDC54-201ENST00000261058 LIN7BQ9HAP6 207 aa7.52□□□□□ -1.21
CCDC54-201ENST00000261058 TRPA1O75762 1119 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 BCRP11274 1271 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 CPB1P15086 417 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 ITPKAP23677 461 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 PTPN12Q05209 780 aaKnown RBP7.51□□□□□ -1.21
CCDC54-201ENST00000261058 TBC1D8BQ0IIM8 1120 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 KANK3Q6NY19 840 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 ADAMTSL4Q6UY14 1074 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 BACH2Q9BYV9 841 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 EHD4Q9H223 541 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 MRS2Q9HD23 443 aa7.51□□□□□ -1.21
CCDC54-201ENST00000261058 TMEM238LA0A1B0GVL6 79 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 PDE2AO00408 941 aaPredicted RBP7.5□□□□□ -1.21
CCDC54-201ENST00000261058 CELA2BP08218 269 aaPredicted RBP7.5□□□□□ -1.21
CCDC54-201ENST00000261058 ALAS2P22557 587 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 GRIA4P48058 902 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 GRIK5Q16478 980 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 ILDR2Q71H61 639 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 EDARADDQ8WWZ3 215 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 POP1Q99575 1024 aaKnown RBP7.5□□□□□ -1.21
CCDC54-201ENST00000261058 RBSNQ9H1K0 784 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 PRDM6Q9NQX0 595 aa7.5□□□□□ -1.21
CCDC54-201ENST00000261058 SHISA8B8ZZ34 492 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 XRCC5P13010 732 aaKnown RBP7.49□□□□□ -1.21
CCDC54-201ENST00000261058 PSAPL1Q6NUJ1 521 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 ELMSAN1Q6PJG2 1045 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 LYPD4Q6UWN0 246 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 GALNT6Q8NCL4 622 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 ADAM19Q9H013 955 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 SMG9Q9H0W8 520 aaKnown RBP7.49□□□□□ -1.21
CCDC54-201ENST00000261058 VTI1BQ9UEU0 232 aa7.49□□□□□ -1.21
CCDC54-201ENST00000261058 SMNDC1O75940 238 aaKnown RBP eCLIP7.48□□□□□ -1.21
CCDC54-201ENST00000261058 ALBP02768 609 aa7.48□□□□□ -1.21
CCDC54-201ENST00000261058 USP17L7P0C7H9 530 aa7.48□□□□□ -1.21
CCDC54-201ENST00000261058 HOXB4P17483 251 aaPredicted RBP7.48□□□□□ -1.21
CCDC54-201ENST00000261058 GSTT1P30711 240 aa7.48□□□□□ -1.21
CCDC54-201ENST00000261058 CHSY3Q70JA7 882 aa7.48□□□□□ -1.21
CCDC54-201ENST00000261058 BTBD6Q96KE9 485 aa7.48□□□□□ -1.21
CCDC54-201ENST00000261058 USP31Q70CQ4 1352 aa7.48□□□□□ -1.21
CCDC54-201ENST00000261058 METTL12A8MUP2 240 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 ST13P50502 369 aaKnown RBP7.47□□□□□ -1.21
CCDC54-201ENST00000261058 COL9A3Q14050 684 aaPredicted RBP7.47□□□□□ -1.21
CCDC54-201ENST00000261058 CEP135Q66GS9 1140 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 CACTIN-AS1Q8N1I8 211 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 MICALL1Q8N3F8 863 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 WHAMMQ8TF30 809 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 PPM1HQ9ULR3 514 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 SOX13Q9UN79 622 aa7.47□□□□□ -1.21
CCDC54-201ENST00000261058 A0A096LPE4 126 aa7.46□□□□□ -1.21
CCDC54-201ENST00000261058 A0A1W2PPZ6 126 aa7.46□□□□□ -1.21
CCDC54-201ENST00000261058 TSNAXIP1Q2TAA8 658 aa7.46□□□□□ -1.21
CCDC54-201ENST00000261058 ZNF385CQ66K41 422 aaPredicted RBP7.46□□□□□ -1.21
CCDC54-201ENST00000261058 BSNDQ8WZ55 320 aa7.46□□□□□ -1.21
CCDC54-201ENST00000261058 METTL5Q9NRN9 209 aaKnown RBP7.46□□□□□ -1.21
CCDC54-201ENST00000261058 TRIM33Q9UPN9 1127 aa7.46□□□□□ -1.21
CCDC54-201ENST00000261058 RGS9O75916 674 aaPredicted RBP7.45□□□□□ -1.22
CCDC54-201ENST00000261058 BAG6P46379 1132 aa7.45□□□□□ -1.22
CCDC54-201ENST00000261058 AFF1P51825 1210 aaKnown RBP7.45□□□□□ -1.22
CCDC54-201ENST00000261058 SPRED3Q2MJR0 410 aa7.45□□□□□ -1.22
CCDC54-201ENST00000261058 RPS26P11Q5JNZ5 115 aaPredicted RBP7.45□□□□□ -1.22
CCDC54-201ENST00000261058 VN1R5Q7Z5H4 357 aa7.45□□□□□ -1.22
CCDC54-201ENST00000261058 ZNF576Q9H609 170 aa7.45□□□□□ -1.22
CCDC54-201ENST00000261058 ZFYVE1Q9HBF4 777 aa7.45□□□□□ -1.22
CCDC54-201ENST00000261058 PPP4R2Q9NY27 417 aa7.45□□□□□ -1.22
CCDC54-201ENST00000261058 SCAMP3O14828 347 aaKnown RBP7.44□□□□□ -1.22
CCDC54-201ENST00000261058 ARHGEF15O94989 841 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 TCF3P15923 654 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 PTPRAP18433 802 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 DGKGP49619 791 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 FCGRTP55899 365 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 FANCCQ00597 558 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 MEI1Q5TIA1 1274 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 MUC3BQ9H195 1237 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 M0R082 166 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 LILRB5O75023 590 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms