RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 NFATC2IPQ8NCF5 419 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 DPF2Q92785 391 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 PLEKHA4Q9H4M7 779 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 GPHNQ9NQX3 736 aaPredicted RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 PCDHA7Q9UN72 937 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 PDIA4P13667 645 aaKnown RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 MARCKSP29966 332 aaPredicted RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 SMC1AQ14683 1233 aaKnown RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 WWC2Q6AWC2 1192 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 MPRIPQ6WCQ1 1025 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 BICC1Q9H694 974 aaKnown RBP16.7■□□□□ 0.26
SDC1-201ENST00000254351 TOMM22Q9NS69 142 aa16.7■□□□□ 0.26
SDC1-201ENST00000254351 GSDMDP57764 484 aa16.69■□□□□ 0.26
SDC1-201ENST00000254351 MAP3K5Q99683 1374 aa16.69■□□□□ 0.26
SDC1-201ENST00000254351 CYP21A2P08686 494 aa16.69■□□□□ 0.26
SDC1-201ENST00000254351 ADD1P35611 737 aaKnown RBP16.69■□□□□ 0.26
SDC1-201ENST00000254351 GNG11P61952 73 aa16.69■□□□□ 0.26
SDC1-201ENST00000254351 ETF1P62495 437 aaKnown RBP16.69■□□□□ 0.26
SDC1-201ENST00000254351 KARSQ15046 597 aaKnown RBP16.69■□□□□ 0.26
SDC1-201ENST00000254351 STK38Q15208 465 aa16.69■□□□□ 0.26
SDC1-201ENST00000254351 TTLL5Q6EMB2 1281 aa16.69■□□□□ 0.26
SDC1-201ENST00000254351 NRDCO43847 1150 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 TPM4P67936 248 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 DESI2Q9BSY9 194 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 CLIC4Q9Y696 253 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 TMEM232C9JQI7 657 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 TAF5LO75529 589 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 SUCLG2Q96I99 432 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 IRX2Q9BZI1 471 aaPredicted RBP16.68■□□□□ 0.26
SDC1-201ENST00000254351 L2HGDHQ9H9P8 463 aa16.68■□□□□ 0.26
SDC1-201ENST00000254351 WDR24Q96S15 920 aa16.67■□□□□ 0.26
SDC1-201ENST00000254351 TFRCP02786 760 aaKnown RBP16.67■□□□□ 0.26
SDC1-201ENST00000254351 CCDC93Q567U6 631 aa16.67■□□□□ 0.26
SDC1-201ENST00000254351 NWD1Q149M9 1564 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 MRPS27Q92552 414 aaKnown RBP16.66■□□□□ 0.26
SDC1-201ENST00000254351 ZSCAN16Q9H4T2 348 aaPredicted RBP16.66■□□□□ 0.26
SDC1-201ENST00000254351 PUF60Q9UHX1 559 aaKnown RBP16.66■□□□□ 0.26
SDC1-201ENST00000254351 MYO1CO00159 1063 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 CTAGE5O15320 804 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 CTDNEP1O95476 244 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 FANCCQ00597 558 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 STOX1Q6ZVD7 989 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 SUGCTQ9HAC7 445 aa16.66■□□□□ 0.26
SDC1-201ENST00000254351 KIF2AO00139 706 aaPredicted RBP16.65■□□□□ 0.26
SDC1-201ENST00000254351 TBC1D8O95759 1140 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 CAVIN2O95810 425 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 SLC3A2P08195 630 aaKnown RBP16.65■□□□□ 0.26
SDC1-201ENST00000254351 UBASH3AP57075 661 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 NSUN7Q8NE18 718 aaKnown RBP16.65■□□□□ 0.26
SDC1-201ENST00000254351 VPS18Q9P253 973 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 RCOR1Q9UKL0 485 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 ZRANB2O95218 330 aaKnown RBP eCLIP16.65■□□□□ 0.26
SDC1-201ENST00000254351 MYL6BP14649 208 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 FOXR1Q6PIV2 292 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 ENGASEQ8NFI3 743 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 RASSF4Q9H2L5 321 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 ADKP55263 362 aaKnown RBP16.65■□□□□ 0.26
SDC1-201ENST00000254351 HAND2P61296 217 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 KIAA1468Q9P260 1216 aa16.65■□□□□ 0.26
SDC1-201ENST00000254351 COL15A1P39059 1388 aa16.64■□□□□ 0.25
SDC1-201ENST00000254351 GPS2Q13227 327 aa16.64■□□□□ 0.25
SDC1-201ENST00000254351 ILDR1Q86SU0 546 aaPredicted RBP16.64■□□□□ 0.25
SDC1-201ENST00000254351 CCDC150Q8NCX0 1101 aa16.64■□□□□ 0.25
SDC1-201ENST00000254351 KCNB2Q92953 911 aa16.64■□□□□ 0.25
SDC1-201ENST00000254351 PARD6BQ9BYG5 372 aa16.64■□□□□ 0.25
SDC1-201ENST00000254351 OSBPL5Q9H0X9 879 aaPredicted RBP16.64■□□□□ 0.25
SDC1-201ENST00000254351 BTBD11A6QL63 1104 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 CC2D1AQ6P1N0 951 aaPredicted RBP16.63■□□□□ 0.25
SDC1-201ENST00000254351 TXLNBQ8N3L3 684 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 RNF216Q9NWF9 866 aaPredicted RBP16.63■□□□□ 0.25
SDC1-201ENST00000254351 N4BP1O75113 896 aaKnown RBP16.63■□□□□ 0.25
SDC1-201ENST00000254351 TADA3O75528 432 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 SPECC1Q5M775 1068 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 FMR1NBQ8N0W7 255 aaPredicted RBP16.63■□□□□ 0.25
SDC1-201ENST00000254351 ZNF396Q96N95 335 aaPredicted RBP16.63■□□□□ 0.25
SDC1-201ENST00000254351 LZTFL1Q9NQ48 299 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 ADAM21Q9UKJ8 722 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 H3BQF6 201 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 TRIM65Q6PJ69 517 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 ERC1Q8IUD2 1116 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 CPLX3Q8WVH0 158 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 NEUROD6Q96NK8 337 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 ARFGAP3Q9NP61 516 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 PARP3Q9Y6F1 533 aa16.63■□□□□ 0.25
SDC1-201ENST00000254351 CASQ1P31415 396 aa16.62■□□□□ 0.25
SDC1-201ENST00000254351 EIF4A1P60842 406 aaKnown RBP16.62■□□□□ 0.25
SDC1-201ENST00000254351 PPP2R3AQ06190 1150 aa16.62■□□□□ 0.25
SDC1-201ENST00000254351 MTX1Q13505 466 aa16.62■□□□□ 0.25
SDC1-201ENST00000254351 HSP90AB3PQ58FF7 597 aa16.62■□□□□ 0.25
SDC1-201ENST00000254351 STRCQ7RTU9 1775 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 HIP1O00291 1037 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 ZNF202O95125 648 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 TOP1P11387 765 aaKnown RBP16.61■□□□□ 0.25
SDC1-201ENST00000254351 IRX3P78415 501 aaPredicted RBP16.61■□□□□ 0.25
SDC1-201ENST00000254351 PDE11AQ9HCR9 933 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 TUBGCP6Q96RT7 1819 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 A0A0U1RQJ8 604 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 PNOCQ13519 176 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 TOGARAM2Q6ZUX3 1019 aa16.61■□□□□ 0.25
SDC1-201ENST00000254351 ATRIPQ8WXE1 791 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms