RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 PON3Q15166 354 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 PPP1R7Q15435 360 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 STK11Q15831 433 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 UAP1Q16222 522 aaPredicted RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 PDK4Q16654 411 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CLEC12BQ2HXU8 276 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SPATA46Q5T0L3 261 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 C9orf135Q5VTT2 229 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ANKRD26P1Q6NSI1 321 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 FAM45BPQ6NSW5 357 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CCDC137Q6PK04 289 aaKnown RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 OPN5Q6U736 354 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 NPSR1Q6W5P4 371 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 HMGN2P46Q86SG4 172 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MARCH3Q86UD3 253 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 IFNEQ86WN2 208 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SYCE1Q8N0S2 351 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SLC35F6Q8N357 371 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 TBC1D19Q8N5T2 526 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 TEX9Q8N6V9 391 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MORN4Q8NDC4 146 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 FBXO36Q8NEA4 188 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 OR1J4Q8NGS1 313 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 OR9A2Q8NGT5 310 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 FAM45AQ8TCE6 357 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 HGDQ93099 445 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 EXOSC8Q96B26 276 aaKnown RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 S100PBPQ96BU1 408 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SH3YL1Q96HL8 342 aaPredicted RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 VPS39Q96JC1 886 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 PANX2Q96RD6 677 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SFXN3Q9BWM7 321 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF717Q9BY31 904 aaPredicted RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 REG4Q9BYZ8 158 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ACTR6Q9GZN1 396 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 PCBD2Q9H0N5 130 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 DSN1Q9H410 356 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 NARFLQ9H6Q4 476 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 RPF2Q9H7B2 306 aaKnown RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 FARSBQ9NSD9 589 aaKnown RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MED11Q9P086 117 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 CLCF1Q9UBD9 225 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF221Q9UK13 617 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MRPS33Q9Y291 106 aaKnown RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SNX24Q9Y343 169 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 RNF11Q9Y3C5 154 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 OARD1Q9Y530 152 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 FLVCR1Q9Y5Y0 555 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 SCN2AQ99250 2005 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MED12Q93074 2177 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 GTF3C1Q12789 2109 aa1.99□□□□□ -2.09
SCFD1-219ENST00000556413 MAP1AP78559 2803 aaPredicted RBP1.99□□□□□ -2.09
SCFD1-219ENST00000556413 ANKRD12Q6UB98 2062 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF407Q9C0G0 2248 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 IGKV2-28A0A075B6P5 120 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 A0A0A6YYD5 115 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 KIR2DL5BA0A0G2JN68 375 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 KIR2DL5BA0A0G2JPC4 375 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 A0A0U1RRA0 63 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 TMEM89A2RUT3 159 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 LRP5LA4QPB2 252 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 UBFD1O14562 309 aaKnown RBP1.98□□□□□ -2.09
SCFD1-219ENST00000556413 DNALI1O14645 258 aaPredicted RBP1.98□□□□□ -2.09
SCFD1-219ENST00000556413 CFLARO15519 480 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 CXCL13O43927 109 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF254O75437 659 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 REM1O75628 298 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 STK16O75716 305 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 LYZL6O75951 148 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 IGKV1D-16P01601 117 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 IGKV2D-28P01615 120 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 C1QAP02745 245 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 IL3P08700 152 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 ZCCHC18P0CG32 403 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 GFAPP14136 432 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF708P17019 499 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 CRYGSP22914 178 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 OPRM1P35372 400 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 CD79BP40259 229 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 MAGEA6P43360 314 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 ZNF83P51522 516 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 XKP51811 444 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 AP1S2P56377 157 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 SKP1P63208 163 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 SARNPP82979 210 aaKnown RBP1.98□□□□□ -2.09
SCFD1-219ENST00000556413 GALK2Q01415 458 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 HMGCS1Q01581 520 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 RELAQ04206 551 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 BSPH1Q075Z2 132 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 PUDPQ08623 228 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 BNIP1Q12981 228 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 PDIA2Q13087 525 aaKnown RBP1.98□□□□□ -2.09
SCFD1-219ENST00000556413 GGTLC2Q14390 218 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 LASP1Q14847 261 aaKnown RBP1.98□□□□□ -2.09
SCFD1-219ENST00000556413 TGFBIQ15582 683 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 ADPRMQ3LIE5 342 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 FBXL19-AS1Q494R0 122 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 TRMT12Q53H54 448 aaKnown RBP1.98□□□□□ -2.09
SCFD1-219ENST00000556413 SPANXN3Q5MJ09 141 aa1.98□□□□□ -2.09
SCFD1-219ENST00000556413 C6orf52Q5T4I8 152 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms