RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SNRPGP15A8MWD9 76 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 TMEM14DPA8MWL7 114 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 SIX6O95475 246 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 IGHV3-9P01782 118 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 CPN1P15169 458 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 HTR2BP41595 481 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 GFRA1P56159 465 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 PRSS12P56730 875 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 HIST1H3AP68431 136 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 C2orf68Q2NKX9 166 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 SNAI3Q3KNW1 292 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 C4orf46Q504U0 113 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 DCAF10Q5QP82 559 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 SFRP5Q5T4F7 317 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 HIST2H3PS2Q5TEC6 136 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 HIST2H3AQ71DI3 136 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 TMED4Q7Z7H5 227 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 MUC20Q8N307 709 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-204ENST00000543140 SLCO5A1Q9H2Y9 848 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 POFUT1Q9H488 388 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 BOKQ9UMX3 212 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-204ENST00000543140 ANKRD34BA5PLL1 514 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 LGALSLQ3ZCW2 172 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF774Q6NX45 483 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 GPR137CQ8N3F9 429 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 BPIFB2Q8N4F0 458 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 OR2M7Q8NG81 312 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 C1orf147Q96MC9 270 aaPredicted RBP14.32□□□□□ -0.12
COL4A1-204ENST00000543140 SLC6A7Q99884 636 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 PIPOXQ9P0Z9 390 aa14.32□□□□□ -0.12
COL4A1-204ENST00000543140 FAM186AA6NE01 2351 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 EP300Q09472 2414 aaPredicted RBP14.31□□□□□ -0.12
COL4A1-204ENST00000543140 A0A0A6YYD4 124 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 FAM166BA8MTA8 275 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 C21orf140B9A014 251 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 TERTO14746 1132 aaKnown RBP14.31□□□□□ -0.12
COL4A1-204ENST00000543140 S100A1P23297 94 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 SPEM2Q0P670 501 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 SPICQ8N5J4 248 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 OR8H1Q8NGG4 311 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 OR10R2Q8NGX6 335 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 OR2AE1Q8NHA4 323 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 LPAR5Q9H1C0 372 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 TMEM9BQ9NQ34 198 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 PIGLQ9Y2B2 252 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 UBE2QL1A1L167 161 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 SOCS1O15524 211 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 SGCEO43556 437 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 CRTAPO75718 401 aaPredicted RBP14.31□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF735P0CB33 412 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF81P51508 661 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 OR1C1Q15619 314 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 C1QL2Q7Z5L3 287 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 AKR7LQ8NHP1 331 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 SPTSSAQ969W0 71 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 GPR137Q96N19 417 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 TMEM38BQ9NVV0 291 aa14.31□□□□□ -0.12
COL4A1-204ENST00000543140 CDC14BO60729 498 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 DHRS3O75911 302 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 ITGB2P05107 769 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 OTX1P32242 354 aaPredicted RBP14.3□□□□□ -0.12
COL4A1-204ENST00000543140 CASRP41180 1078 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 KISS1Q15726 138 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 UBE2V2Q15819 145 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 CEACAM16Q2WEN9 425 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 ABLIM2Q6H8Q1 611 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 SULF2Q8IWU5 870 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 FAM173AQ9BQD7 235 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 KCNK7Q9Y2U2 307 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 A0A0U1RQV5 110 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 TMEM82A0PJX8 343 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 IGLV3-1P01715 115 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 C17orf107Q6ZR85 190 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 FTMTQ8N4E7 242 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 TNFAIP8L1Q8WVP5 186 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 TMEM59Q9BXS4 323 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 PTTG3PQ9NZH4 202 aa14.3□□□□□ -0.12
COL4A1-204ENST00000543140 CD74P04233 296 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF806P0C7X5 589 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 LIPCP11150 499 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF32P17041 273 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 H2BFSP57053 126 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 TSPAN5P62079 268 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 CXADRP78310 365 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 HGFACQ04756 655 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 ECH1Q13011 328 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 PLAC9Q5JTB6 97 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 OR10K1Q8NGX5 313 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 KCNG3Q8TAE7 436 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 ADAMTS17Q8TE56 1095 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 PIGTQ969N2 578 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 SGK3Q96BR1 496 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF703Q9H7S9 590 aaPredicted RBP14.29□□□□□ -0.12
COL4A1-204ENST00000543140 IFT46Q9NQC8 304 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 MRPS18CQ9Y3D5 142 aaKnown RBP14.29□□□□□ -0.12
COL4A1-204ENST00000543140 STMND1H3BQB6 276 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 SSX5O60225 188 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 MAGEA5P43359 124 aa14.29□□□□□ -0.12
COL4A1-204ENST00000543140 EIF3IQ13347 325 aaKnown RBP14.29□□□□□ -0.12
COL4A1-204ENST00000543140 RNASE10Q5GAN6 216 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms