RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 H3BSH0 61 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 H7C417 338 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 ACKR3P25106 362 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 MAP2K4P45985 399 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 TBCEQ15813 527 aaPredicted RBP25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 ZMAT1Q5H9K5 638 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 ZFP41Q8N8Y5 198 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 OR8G5Q8NG78 346 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 TPK1Q9H3S4 243 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 CYSLTR2Q9NS75 346 aa25.27■■□□□ 1.64
LIMCH1-211ENST00000509638 CCDC168Q8NDH2 2452 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 TRBV2A0A0J9YWF9 115 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 A0A1B0GTI1 187 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 ZNF81P51508 661 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 MED22Q15528 200 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 RPL22L1Q6P5R6 122 aaKnown RBP25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 Q6ZR03 302 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 RDH10Q8IZV5 341 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 ZNF676Q8N7Q3 588 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 VRK1Q99986 396 aaPredicted RBP25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 PDCD1LG2Q9BQ51 273 aa25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 SIRT4Q9Y6E7 314 aaPredicted RBP25.26■■□□□ 1.63
LIMCH1-211ENST00000509638 A0A1B0GVI7 797 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 MRPS14O60783 128 aaKnown RBP25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 DHRS3O75911 302 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 ZFPL1O95159 310 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 TNFAIP8O95379 198 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 CCL1P22362 96 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 LIPAP38571 399 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 TAS2R43P59537 309 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 SPHARQ15513 63 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 DOK3Q7L591 496 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 RPS4Y2Q8TD47 263 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 NINJ1Q92982 152 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 SMIM19Q96E16 107 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 MS4A5Q9H3V2 200 aa25.25■■□□□ 1.63
LIMCH1-211ENST00000509638 TMEM212A6NML5 194 aa25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 SYT7O43581 403 aa25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 DDOSTP39656 456 aa25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 PLPP7Q8NBV4 271 aa25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 COMMD4Q9H0A8 199 aa25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 CHD3Q12873 2000 aaKnown RBP25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 MAP1AP78559 2803 aaPredicted RBP25.24■■□□□ 1.63
LIMCH1-211ENST00000509638 PNMA8CA0A1B0GUJ8 204 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 LOC390937A0A1W2PQ73 354 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 TRIM64A6NGJ6 449 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 C17orf100A8MU93 164 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 MTRF1O75570 445 aaKnown RBP25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 ISG15P05161 165 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 TMEM244Q5VVB8 128 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 ZNF773Q6PK81 442 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 OR5AK2Q8NH90 309 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 SORCS2Q96PQ0 1159 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 SLC30A2Q9BRI3 323 aa25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 MRPL15Q9P015 296 aaKnown RBP25.23■■□□□ 1.63
LIMCH1-211ENST00000509638 SPRY3O43610 288 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 MAP2K3P46734 347 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 FTMTQ8N4E7 242 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 SVOPQ8N4V2 548 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 CSNK2A3Q8NEV1 391 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 SEMA6DQ8NFY4 1073 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 OR10AD1Q8NGE0 317 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 OR10AC1Q8NH08 325 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 OGG1O15527 345 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 ATP6V1B1P15313 513 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 ACHEP22303 614 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 BDH1Q02338 343 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 SLC3A1Q07837 685 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 DMKNQ6E0U4 476 aaPredicted RBP25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 SPARTQ8N0X7 666 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 OR2Z1Q8NG97 314 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 PAPOLGQ9BWT3 736 aaKnown RBP25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 ACOT13Q9NPJ3 140 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 ZNF701Q9NV72 531 aaPredicted RBP25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 PIGLQ9Y2B2 252 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 V9GYS6 101 aa25.22■■□□□ 1.63
LIMCH1-211ENST00000509638 ANKRD30BLA7E2S9 258 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 IGHV1-46P01743 117 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 FAHP16930 419 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 CA6P23280 308 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 DEFB113Q30KQ7 82 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 OR51A4Q8NGJ6 313 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 OR13G1Q8NGZ3 307 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 ELMOD3Q96FG2 381 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 PERPQ96FX8 193 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 ADAT1Q9BUB4 502 aaKnown RBP25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 PLEKHA1Q9HB21 404 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 TMEM100Q9NV29 134 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 BEX4Q9NWD9 120 aaPredicted RBP25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 ZDHHC8Q9ULC8 765 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 RHBDD3Q9Y3P4 386 aa25.21■■□□□ 1.63
LIMCH1-211ENST00000509638 MLNRO43193 412 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 NDUFS7O75251 213 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 HLA-DPB1P04440 258 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 ERCC1P07992 297 aaPredicted RBP25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 EMX1Q04741 257 aaPredicted RBP25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 ACSM1Q08AH1 577 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 Q6ZSR3 168 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 OR14K1Q8NGZ2 314 aa25.2■■□□□ 1.62
LIMCH1-211ENST00000509638 DVL3Q92997 716 aaPredicted RBP25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms