RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 LHBP01229 141 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 APOC1P02654 83 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 ANXA2P07355 339 aaKnown RBP13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 RAP2AP10114 183 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 CALB2P22676 271 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 HSD11B1P28845 292 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 GSTT1P30711 240 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 GRK5P34947 590 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 CFHR2P36980 270 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 FAM3AP98173 230 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 TIGD6Q17RP2 521 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 DEFB112Q30KQ8 113 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 PRR31Q5SQ13 230 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 C16orf87Q6PH81 154 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 RHOUQ7L0Q8 258 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 SLC16A9Q7RTY1 509 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 DPY19L4Q7Z388 723 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 ERI1Q8IV48 349 aaKnown RBP13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 OR6N2Q8NGY6 317 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 OR8S1Q8NH09 359 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 RNF133Q8WVZ7 376 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 REEP6Q96HR9 211 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 CCT8L2Q96SF2 557 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 PCGF1Q9BSM1 259 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 ABHD6Q9BV23 337 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 ZNF696Q9H7X3 374 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 MED20Q9H944 212 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 MARCH7Q9H992 704 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 KIF17Q9P2E2 1029 aa13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 PRPF19Q9UMS4 504 aaKnown RBP13.75□□□□□ -0.21
CCDC28B-204ENST00000469003 hCG_1807616A0A1W2PRN6 198 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 FAM183AA6NL82 134 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 HOXA3O43365 443 aaPredicted RBP13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 GLCEO94923 617 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 GYPAP02724 150 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 MMP9P14780 707 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 CFL1P23528 166 aaKnown RBP13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 C11orf91Q3C1V1 193 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 TEX36Q5VZQ5 186 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 SHFQ7M4L6 423 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 PRSS45Q7RTY3 260 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 FAM90A1Q86YD7 464 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 PNLDC1Q8NA58 520 aaKnown RBP13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 GIPC3Q8TF64 312 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 ZDHHC16Q969W1 377 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 SGK3Q96BR1 496 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 ASB9Q96DX5 294 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 LRGUKQ96M69 825 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 FEVQ99581 238 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 RNPEPL1Q9HAU8 725 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 SMURF1Q9HCE7 757 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 NOX4Q9NPH5 578 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 KAAG1Q9UBP8 84 aa13.74□□□□□ -0.21
CCDC28B-204ENST00000469003 hCG_38984A0A1B0GV85 526 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 ARRDC5A6NEK1 342 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 SRRM5B3KS81 715 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 H3BN98 237 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 TOX4O94842 621 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 CST1P01037 141 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 SFTPBP07988 381 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 ZNF121P58317 390 aaPredicted RBP13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 FAM57BQ71RH2 274 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 WDR86Q86TI4 376 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 C11orf53Q8IXP5 236 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 TIGD4Q8IY51 512 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 IQCF1Q8N6M8 205 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 OR52H1Q8NGJ2 320 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 WDFY2Q96P53 400 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 TBX15Q96SF7 602 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 OR10A2Q9H208 303 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 RASSF4Q9H2L5 321 aa13.73□□□□□ -0.21
CCDC28B-204ENST00000469003 FCN3O75636 299 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 TIPRLO75663 272 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 ECDO95905 644 aaPredicted RBP13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 T-ENOLP0DO92 83 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 MUC1P15941 1255 aaPredicted RBP13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 PAICSP22234 425 aaKnown RBP13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 OPRL1P41146 370 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 GSK3AP49840 483 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 KLHL12Q53G59 568 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 METTL11BQ5VVY1 283 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 RUSC1-AS1Q66K80 236 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 Q6YL49 198 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 CSNK2A3Q8NEV1 391 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 OR1M1Q8NGA1 313 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 LRRC29Q8WV35 223 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 TAF15Q92804 592 aaKnown RBP eCLIP13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 TMIGD2Q96BF3 282 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 OTULINQ96BN8 352 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 CCDC124Q96CT7 223 aaKnown RBP13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 AMELYQ99218 206 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 CHID1Q9BWS9 393 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 SIRPDQ9H106 197 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 SLITRK2Q9H156 845 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 DNAJC27Q9NZQ0 273 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 ZNF319Q9P2F9 582 aa13.72□□□□□ -0.21
CCDC28B-204ENST00000469003 IGHV3OR15-7A0A075B7D8 119 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 CENPVL3A0A0U1RRI6 287 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 DVL1O14640 695 aa13.71□□□□□ -0.21
CCDC28B-204ENST00000469003 ACOT8O14734 319 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms