RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 LHX9Q9NQ69 397 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 ARRB2P32121 409 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 OR4C3Q8NH37 302 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 OR1F12Q8NHA8 337 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 SOX7Q9BT81 388 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 C11orf54Q9H0W9 315 aaPredicted RBP14.02□□□□□ -0.16
PTPRF-201ENST00000359947 DLL4Q9NR61 685 aa14.02□□□□□ -0.16
PTPRF-201ENST00000359947 TRPM3Q9HCF6 1732 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 EGR3Q06889 387 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 SIGLEC14Q08ET2 396 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 PRR27Q6MZM9 219 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 APOBEC3DQ96AK3 386 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 NDFIP1Q9BT67 221 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 LIN7CQ9NUP9 197 aaKnown RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 TIMM9Q9Y5J7 89 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 KRBOX1C9JBD0 128 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 TERTO14746 1132 aaKnown RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 MISP3Q96FF7 219 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 V9GYS6 101 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 TNRC6CQ9HCJ0 1690 aaKnown RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 HRH1P35367 487 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 TAGLN2P37802 199 aaKnown RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 ACVR1Q04771 509 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 RNPS1Q15287 305 aaKnown RBP14.02□□□□□ -0.17
PTPRF-201ENST00000359947 OR2T6Q8NHC8 308 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 RPEQ96AT9 228 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 PSD2Q9BQI7 771 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 ASIC5Q9NY37 505 aa14.02□□□□□ -0.17
PTPRF-201ENST00000359947 PRSS12P56730 875 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 HTRA4P83105 476 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 SNTB1Q13884 538 aaKnown RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 SLC17A1Q14916 467 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 NECAP1Q8NC96 275 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF707Q96C28 371 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 HES4Q9HCC6 221 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 TNFRSF12AQ9NP84 129 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 NME2P1O60361 137 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 PMS2P2O95744 297 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 CELF2-AS1Q8N7Q2 184 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 OR10R2Q8NGX6 335 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 GATA6Q92908 595 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 AKAP11Q9UKA4 1901 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 PATE4P0C8F1 98 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 UBE2MP61081 183 aaKnown RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 TNFAIP6P98066 277 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 OR6S1Q8NH40 331 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 RFESDQ8TAC1 157 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 CSAG2Q9Y5P2 127 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 APC2O95996 2303 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 SLC25A6P12236 298 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 HOXB3P14651 431 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 FMODQ06828 376 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 SOHLH1Q5JUK2 328 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 TERB2Q8NHR7 220 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 RAB1BQ9H0U4 201 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 SEC14L6B5MCN3 397 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 OR3A4PP47883 348 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 NXPH1P58417 271 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 TMEM65Q6PI78 240 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 DRAM2Q6UX65 266 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 KDF1Q8NAX2 398 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 KLK4Q9Y5K2 254 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 DOCK1Q14185 1865 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 LCN15Q6UWW0 184 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 ADPRHL1Q8NDY3 354 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 APH1BQ8WW43 257 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 MYOZ1Q9NP98 299 aaPredicted RBP14.01□□□□□ -0.17
PTPRF-201ENST00000359947 B9D1Q9UPM9 204 aa14.01□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF701M0R085 212 aaPredicted RBP14□□□□□ -0.17
PTPRF-201ENST00000359947 DFFBO76075 338 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF117Q03924 483 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 ERGIC1Q969X5 290 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 FCN2Q15485 313 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 TMEM41BQ5BJD5 291 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 C20orf196Q8IYI0 205 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 OR10P1Q8NGE3 313 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 NIPSNAP3BQ9BS92 247 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 ACOT8O14734 319 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 COX7A2P2O60397 106 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 HAGHQ16775 308 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 CISD3P0C7P0 127 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 BTNL3Q6UXE8 466 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 RND1Q92730 232 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 AMER3Q8N944 861 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 LRFN3Q9BTN0 628 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 PCED1AQ9H1Q7 454 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 PPIL1Q9Y3C6 166 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 PCM1Q15154 2024 aa14□□□□□ -0.17
PTPRF-201ENST00000359947 PDGFAP04085 211 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 GALNSP34059 522 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 NPEPL1Q8NDH3 523 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 ZNRF4Q8WWF5 429 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 ST8SIA3O43173 380 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 MGMTP16455 207 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 ETV6P41212 452 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 RAB5CP51148 216 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 BTN1A1Q13410 526 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF774Q6NX45 483 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 OR4F5Q8NH21 305 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 OR4F4Q96R69 305 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms