RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ACTC1P68032 377 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 ACTA1P68133 377 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 TNFAIP6P98066 277 aaPredicted RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 ZNF92Q03936 586 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 EGR3Q06889 387 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 TRIP10Q15642 601 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 OCLNQ16625 522 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 TSTQ16762 297 aaKnown RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 TIGD6Q17RP2 521 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 TMEM249Q2WGJ8 235 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 HFEQ30201 348 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 GLYATL3Q5SZD4 288 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 OR2T2Q6IF00 324 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 Q6ZR03 302 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 USP51Q70EK9 711 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 SPATC1Q76KD6 591 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 PRSS45Q7RTY3 260 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 KRT77Q7Z794 578 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 KLBQ86Z14 1044 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 FTMTQ8N4E7 242 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 CELF2-AS1Q8N7Q2 184 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 OR8B4Q96RC9 309 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 ZNF275Q9NSD4 429 aaPredicted RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 KLHDC2Q9Y2U9 406 aa10.07□□□□□ -0.8
VPS52-213ENST00000461743 SONP18583 2426 aaKnown RBP10.07□□□□□ -0.8
VPS52-213ENST00000461743 ANK3Q12955 4377 aaKnown RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 hCG_38984A0A1B0GV85 526 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 CD300LBA8K4G0 201 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 CASQ2O14958 399 aaPredicted RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 TBX1O43435 398 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 CD5LO43866 347 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR2T7P0C7T2 308 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 GATA4P43694 442 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 GZMKP49863 264 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 RIDAP52758 137 aaKnown RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 MZT1Q08AG7 82 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 ZIK1Q3SY52 487 aaPredicted RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 ZNF322Q6U7Q0 402 aaPredicted RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 LRRN1Q6UXK5 716 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 BCDIN3DQ7Z5W3 292 aaKnown RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 NAA40Q86UY6 237 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR5AS1Q8N127 324 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 ZNF555Q8NEP9 628 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 CSNK2A3Q8NEV1 391 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR2Z1Q8NG97 314 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR51G2Q8NGK0 314 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR2T27Q8NH04 317 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR2AE1Q8NHA4 323 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 SPRYD4Q8WW59 207 aaPredicted RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 YIPF5Q969M3 257 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 ERGIC1Q969X5 290 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 TIMD4Q96H15 378 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 REEP6Q96HR9 211 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 PGAM5Q96HS1 289 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 Q96MT0 163 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 OR2V2Q96R30 315 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 SLC29A1Q99808 456 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 APOL4Q9BPW4 351 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 ABCB9Q9NP78 766 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 TMEM100Q9NV29 134 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 DNAJC27Q9NZQ0 273 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 COPS3Q9UNS2 423 aa10.06□□□□□ -0.8
VPS52-213ENST00000461743 FN1P02751 2386 aaKnown RBP10.06□□□□□ -0.8
VPS52-213ENST00000461743 IGHV4-61A0A0C4DH41 118 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 A0A0U1RQV5 110 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 LOC100130705A0A1B0GUX0 176 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 GGT3PA6NGU5 568 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 MLNRO43193 412 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 GMDSO60547 372 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 LY6G6DO95868 133 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 SLC2A1P11166 492 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 GABRB1P18505 474 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 COL8A2P25067 703 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 PEX2P28328 305 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 CD200P41217 278 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 MTNR1AP48039 350 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 MMP16P51512 607 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 CXCR4P61073 352 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 KRTAP1-1Q07627 177 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 OR8B8Q15620 311 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 ZNF181Q2M3W8 571 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 OGFRL1Q5TC84 451 aaPredicted RBP10.05□□□□□ -0.8
VPS52-213ENST00000461743 FAM57BQ71RH2 274 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 PEG10Q86TG7 708 aaKnown RBP10.05□□□□□ -0.8
VPS52-213ENST00000461743 SPERTQ8NA61 448 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 PLPP7Q8NBV4 271 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 BHLHE23Q8NDY6 225 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 ADAT1Q9BUB4 502 aaKnown RBP10.05□□□□□ -0.8
VPS52-213ENST00000461743 OCEL1Q9H607 264 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 FAM118AQ9NWS6 357 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 NUFIP1Q9UHK0 495 aaKnown RBP10.05□□□□□ -0.8
VPS52-213ENST00000461743 IKZF2Q9UKS7 526 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 PCDHGB1Q9Y5G3 927 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 WNK2Q9Y3S1 2297 aa10.05□□□□□ -0.8
VPS52-213ENST00000461743 NAV3Q8IVL0 2385 aa10.04□□□□□ -0.8
VPS52-213ENST00000461743 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.04□□□□□ -0.8
VPS52-213ENST00000461743 TMEM269A0A1B0GVZ9 245 aa10.04□□□□□ -0.8
VPS52-213ENST00000461743 LYNX1G3V0Z9 82 aa10.04□□□□□ -0.8
VPS52-213ENST00000461743 PPIHO43447 177 aaKnown RBP10.04□□□□□ -0.8
VPS52-213ENST00000461743 LILRA1O75019 489 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms