RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ZNF319Q9P2F9 582 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 NPTNQ9Y639 398 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 DOCK11Q5JSL3 2073 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 EML6Q6ZMW3 1958 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 TRBV5-5A0A0J9YX44 114 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 RNF222A6NCQ9 220 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 PRR19A6NJB7 356 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 FOXF1Q12946 379 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 UNC119Q13432 240 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 ELOCQ15369 112 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 ELAVL1Q15717 326 aaKnown RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 FAM189A2Q15884 450 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 C11orf87Q6NUJ2 197 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 NUP54Q7Z3B4 507 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 LRRC75AQ8NAA5 344 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 FOXRED1Q96CU9 486 aaPredicted RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 OR51B6Q9H340 312 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 GDF2Q9UK05 429 aaPredicted RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 RFPL4AA6NLU0 287 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 RFPL4AL1F8VTS6 287 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 NME2P1O60361 137 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 WDPCPO95876 746 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 HPP00738 406 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 SNRNP70P08621 437 aaKnown RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 VSIG8P0DPA2 414 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 AMY2BP19961 511 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CNR1P21554 472 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CCNOP22674 350 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 MPGP29372 298 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CSNK2A1P68400 391 aaPredicted RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 SLC35D3Q5M8T2 416 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 ELFN2Q5R3F8 820 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 OR2A2Q6IF42 318 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 JMJD6Q6NYC1 403 aaPredicted RBP7.7□□□□□ -1.18
USP40-203ENST00000427112 LDLRAD3Q86YD5 345 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CSNK2A3Q8NEV1 391 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 UBALD1Q8TB05 177 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 GPX8Q8TED1 209 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 CCDC107Q8WV48 283 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 WWTR1Q9GZV5 400 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 GPR84Q9NQS5 396 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 TUBG2Q9NRH3 451 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 KIF25Q9UIL4 384 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 FBXL21Q9UKT6 434 aa7.7□□□□□ -1.18
USP40-203ENST00000427112 ZNF814B7Z6K7 855 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 CTDSPLO15194 276 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 LRP3O75074 770 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 ZNF93P35789 620 aaPredicted RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 PLA2G5P39877 138 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 ACTBP60709 375 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 PPIAP62937 165 aaKnown RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 ACTG1P63261 375 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 SMAD4Q13485 552 aaKnown RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 RAB32Q13637 225 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 GGTLC2Q14390 218 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 TMEM176BQ3YBM2 270 aaPredicted RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 PHLDA2Q53GA4 152 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 ADGRE4PQ86SQ3 457 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 VASH2Q86V25 355 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 ZNF595Q8IYB9 648 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 OR51T1Q8NGJ9 327 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 OR52N5Q8NH56 324 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 ST7LQ8TDW4 575 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 SLAMF6Q96DU3 332 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 VN1R1Q9GZP7 353 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 FN3KRPQ9HA64 309 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 GPN3Q9UHW5 284 aaPredicted RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 TRAV36DV7A0A075B6V5 113 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 C9orf170A2RU37 121 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 SNRPGP15A8MWD9 76 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 SPRY1O43609 319 aaPredicted RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 NDUFS6O75380 124 aaKnown RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 MED6O75586 246 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 RAD51DO75771 328 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 BGLAPP02818 100 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 RPA2P15927 270 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 FAHP16930 419 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 ADCYAP1P18509 176 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 FBLP22087 321 aaKnown RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 IGFBP7Q16270 282 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 MICBQ29980 383 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 RPL7L1Q6DKI1 246 aaKnown RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 ADAM5Q6NVV9 412 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 PPP1R3BQ86XI6 285 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 C17orf78Q8N4C9 275 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 EXD3Q8N9H8 876 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 SLC38A9Q8NBW4 561 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 GPBAR1Q8TDU6 330 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 MCHR2Q969V1 340 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 OR10C1Q96KK4 312 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 S100A13Q99584 98 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 SPSB2Q99619 263 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 MTIF3Q9H2K0 278 aaKnown RBP7.69□□□□□ -1.18
USP40-203ENST00000427112 PRO1933Q9H354 126 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 EHFQ9NZC4 300 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 AMDHD2Q9Y303 409 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 TMEM14AQ9Y6G1 99 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 TTC28Q96AY4 2481 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 FAM230AA0A1W2PPH8 454 aa7.69□□□□□ -1.18
USP40-203ENST00000427112 KRBOX1C9JBD0 128 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms