RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PPIAL4GP0DN37 164 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 RPS2P15880 293 aaKnown RBP15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 SLC15A1P46059 708 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 COMPP49747 757 aaPredicted RBP15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 CRMP1Q14194 572 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 TAF13Q15543 124 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 ARMCX4Q5H9R4 360 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 NLRC3Q7RTR2 1065 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 DCXRQ7Z4W1 244 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 KLBQ86Z14 1044 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 SPERTQ8NA61 448 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 DVL3Q92997 716 aaPredicted RBP15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 KCNJ15Q99712 375 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 SLC6A7Q99884 636 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 COPS4Q9BT78 406 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 NUP50Q9UKX7 468 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 PPIAL4AQ9Y536 164 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 U3KQV3 271 aa15.99■□□□□ 0.15
CCDC28A-203ENST00000617445 ARRDC5A6NEK1 342 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF593O00488 134 aaPredicted RBP15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 T-ENOLP0DO92 83 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF3P17036 446 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 SPI1P17947 270 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 SEC61A1P61619 476 aaKnown RBP15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 ACTG1P63261 375 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 PAX8Q06710 450 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 MZT1Q08AG7 82 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 HNRNPA0Q13151 305 aaKnown RBP15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 MAB21L1Q13394 359 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 OR8G1Q15617 311 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF404Q494X3 552 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 BTNL3Q6UXE8 466 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 LRRN1Q6UXK5 716 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 RBMS3Q6XE24 437 aaKnown RBP15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 OR51L1Q8NGJ5 315 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 OR9Q1Q8NGQ5 310 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNRF4Q8WWF5 429 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 NEIL1Q96FI4 390 aaPredicted RBP15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 TMEM246Q9BRR3 403 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 SP140LQ9H930 580 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 CMC2Q9NRP2 79 aa15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 MRPL15Q9P015 296 aaKnown RBP15.98■□□□□ 0.15
CCDC28A-203ENST00000617445 GGT3PA6NGU5 568 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF878C9JN71 531 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 PTBP3O95758 552 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 APOC1P02654 83 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 SPARCP09486 303 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 DDOSTP39656 456 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 PMELP40967 661 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 RPS27P42677 84 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 GNB2P62879 340 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 GRB2P62993 217 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF92Q03936 586 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 PPP1R8Q12972 351 aaKnown RBP15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 KCNJ8Q15842 424 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 TUSC1Q2TAM9 212 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 SNAI3Q3KNW1 292 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 RHOUQ7L0Q8 258 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 ZNF511Q8NB15 262 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 OR10G2Q8NGC3 310 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 OR8B3Q8NGG8 313 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 OR4Q3Q8NH05 313 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 TEX47Q8TBZ9 253 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 GIPC3Q8TF64 312 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 GCDHQ92947 438 aaPredicted RBP15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 SLAMF6Q96DU3 332 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 OR8B2Q96RD0 313 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 TOR3AQ9H497 397 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 FN3KRPQ9HA64 309 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 ARMC1Q9NVT9 282 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 VNN3Q9NY84 501 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 TAS2R1Q9NYW7 299 aa15.97■□□□□ 0.15
CCDC28A-203ENST00000617445 TENM1Q9UKZ4 2725 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 TMEM89A2RUT3 159 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 AQP12BA6NM10 295 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 XRCC2O43543 280 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 RGS9O75916 674 aaPredicted RBP15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 SOX14O95416 240 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 CST1P01037 141 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 CA6P23280 308 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 RBMXP38159 391 aaKnown RBP15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 DCDC5Q6ZRR9 648 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 AQP12AQ8IXF9 295 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 OR6K6Q8NGW6 343 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 RAB40AQ8WXH6 277 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 FEVQ99581 238 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 CHID1Q9BWS9 393 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 TRIM36Q9NQ86 728 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 CENPMQ9NSP4 180 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 RNF7Q9UBF6 113 aa15.96■□□□□ 0.15
CCDC28A-203ENST00000617445 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 ACOT8O14734 319 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 ZNF205O95201 554 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 GYPBP06028 91 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 GRK5P34947 590 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 PAX2Q02962 417 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 GLYATL3Q5SZD4 288 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 LYPD4Q6UWN0 246 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 SHFQ7M4L6 423 aa15.95■□□□□ 0.14
CCDC28A-203ENST00000617445 SPSB4Q96A44 273 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms