RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 UBXN8O00124 270 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CHEK1O14757 476 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 BCKDKO14874 412 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 SUPT3HO75486 399 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 AIFM1O95831 613 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 IGHV3-23P01764 117 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 TPM3P06753 285 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CNR1P21554 472 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 NT5EP21589 574 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ZP3P21754 424 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CPN2P22792 545 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ATP5DP30049 168 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ACVR1BP36896 505 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 SSR2P43308 183 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 SLC6A8P48029 635 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CNN1P51911 297 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 HADHBP55084 474 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ATP5J2P56134 94 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 TAS2R39P59534 338 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 IL18R1Q13478 541 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 DOC2AQ14183 400 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ARHGAP19Q14CB8 494 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 EBPQ15125 230 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 OR4D1Q15615 310 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 SMU1Q2TAY7 513 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 RIPPLY2Q5TAB7 128 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 LGSNQ5TDP6 509 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 HIST2H2AA3Q6FI13 130 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 UFSP1Q6NVU6 142 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ENPP6Q6UWR7 440 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 P4HA3Q7Z4N8 544 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CMC1Q7Z7K0 106 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 LRRC6Q86X45 466 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 GRAMD2AQ8IUY3 354 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CCDC170Q8IYT3 715 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 GATSQ8NAP1 163 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 FAM83FQ8NEG4 500 aaPredicted RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CDC26Q8NHZ8 85 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 NEIL3Q8TAT5 605 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 RAB3IL1Q8TBN0 382 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 NT5CQ8TCD5 201 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 TMEM37Q8WXS4 190 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 EFHD2Q96C19 240 aaPredicted RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 EBNA1BP2Q99848 306 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 AIF1LQ9BQI0 150 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 MED18Q9BUE0 208 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 IL22Q9GZX6 179 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 DDX47Q9H0S4 455 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 NXF5Q9H1B4 397 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 METTL7AQ9H8H3 244 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 TRIM45Q9H8W5 580 aaPredicted RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 FOLH1BQ9HBA9 442 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 PARVBQ9HBI1 364 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ADAP2Q9NPF8 381 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 NDUFA13Q9P0J0 144 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 MBD2Q9UBB5 411 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 MTRF1LQ9UGC7 380 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 PURGQ9UJV8 347 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 C15orf41Q9Y2V0 281 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 YARS2Q9Y2Z4 477 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 SLC22A7Q9Y694 548 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CHCHD2Q9Y6H1 151 aaPredicted RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 ANKHD1Q8IWZ3 2542 aaKnown RBP2.01□□□□□ -2.09
SCFD1-219ENST00000556413 HIVEP2P31629 2446 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 CNTRLQ7Z7A1 2325 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 RYR2Q92736 4967 aa2.01□□□□□ -2.09
SCFD1-219ENST00000556413 NIPBLQ6KC79 2804 aaeCLIP2□□□□□ -2.09
SCFD1-219ENST00000556413 ABCA4P78363 2273 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 KCNE1BA0A087WTH5 132 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 UQCRHLA0A096LP55 91 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 IGHV3-15A0A0B4J1V0 119 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 A0A1W2PNV4 684 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 LRIT2A6NDA9 550 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 MIF4GDA9UHW6 222 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 C9JVG2 144 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 NPIPA7E9PJI5 369 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 C11orf98E9PRG8 122 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TXNDC9O14530 226 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 UGT2B11O75310 529 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ATP6V1G1O75348 118 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TRIM3O75382 744 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 TNFSF13O75888 250 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 AQP8O94778 261 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 C8GP07360 202 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SOD3P08294 240 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 HIST1H2AGP0C0S8 130 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 CCDC166P0CW27 439 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 NPIPA8P0DM63 369 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 SMIM10L1P0DMW3 83 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 C1GALT1C1LP0DN25 315 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 POU2F1P14859 743 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 PGAM1P18669 254 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 TPSB2P20231 275 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 ATP5A1P25705 553 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 PTBP1P26599 531 aaKnown RBP eCLIP2□□□□□ -2.09
SCFD1-219ENST00000556413 LOXP28300 417 aaPredicted RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 PTPN6P29350 595 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 HSD17B2P37059 387 aa2□□□□□ -2.09
SCFD1-219ENST00000556413 RBMXP38159 391 aaKnown RBP2□□□□□ -2.09
SCFD1-219ENST00000556413 PTGDSP41222 190 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms