RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 CX3CR1P49238 355 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 STPG2Q8N412 459 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 OR4K15Q8NH41 348 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 ST7LQ8TDW4 575 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 GPX8Q8TED1 209 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 MRI1Q9BV20 369 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 SHPKQ9UHJ6 478 aa12.14□□□□□ -0.47
PRPF40B-209ENST00000548825 FAM230AA0A1W2PPH8 454 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 hCG_1807616A0A1W2PRN6 198 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 STMND1H3BQB6 276 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 PTGS2P35354 604 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 SRYQ05066 204 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 CLLU1Q5K131 121 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM65Q6PI78 240 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 TMPPEQ6ZT21 453 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 YRDCQ86U90 279 aaKnown RBP12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 PDZD9Q8IXQ8 264 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ZNF160Q9HCG1 818 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 CHMP1AQ9HD42 196 aaPredicted RBP12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 GPR27Q9NS67 375 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ZNF275Q9NSD4 429 aaPredicted RBP12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 KCNK7Q9Y2U2 307 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 EML6Q6ZMW3 1958 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 A0A1B0GV50 99 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 LIPT2A6NK58 231 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 NPIPB7O75200 414 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 AMY2BP19961 511 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 EPHA4P54764 986 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ACY1Q03154 408 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 LYSMD4Q5XG99 296 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 SLC36A1Q7Z2H8 476 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 DMRTA2Q96SC8 542 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 TMPRSS13Q9BYE2 586 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM231Q9H6L2 316 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 SRPK3Q9UPE1 567 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ANKUB1A6NFN9 424 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 PCP4L1A6NKN8 68 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 NPIPA2E9PIF3 369 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 NPIPA3F8WFD2 350 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ADAM10O14672 748 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ZNF208O43345 1280 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 IGLV3-19P01714 112 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 RRASP10301 218 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 PRKACBP22694 351 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 UNC119Q13432 240 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 COL13A1Q5TAT6 717 aaPredicted RBP12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 RHBDD2Q6NTF9 364 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 SPERTQ8NA61 448 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 INO80EQ8NBZ0 244 aaPredicted RBP12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 OR8B12Q8NGG6 310 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 THAP6Q8TBB0 222 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 LIPHQ8WWY8 451 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 DCUN1D4Q92564 292 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 RAB3CQ96E17 227 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ARHGAP5-AS1Q96IT6 56 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 RASL10BQ96S79 203 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 ASF1BQ9NVP2 202 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 MBD2Q9UBB5 411 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 SIT1Q9Y3P8 196 aa12.13□□□□□ -0.47
PRPF40B-209ENST00000548825 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 MEGF11A6BM72 1044 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SNRPGP15A8MWD9 76 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 FTCDNL1E5RQL4 147 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 APOBEC1P41238 236 aaKnown RBP12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TEX30Q5JUR7 227 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM17Q86X19 198 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM185AQ8NFB2 350 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 OR5L2Q8NGL0 311 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TOMM40LQ969M1 308 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SLC25A28Q96A46 364 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 PNPLA2Q96AD5 504 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM59Q9BXS4 323 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SMIM3Q9BZL3 60 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 C12orf4Q9NQ89 552 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 GPR160Q9UJ42 338 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 DKKL1Q9UK85 242 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 WIF1Q9Y5W5 379 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 FREM1Q5H8C1 2179 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 NMBP08949 121 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM225BP0DP42 221 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 CSNK2A1P68400 391 aaPredicted RBP12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SCRN3Q0VDG4 424 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SMAD4Q13485 552 aaKnown RBP12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 HLA-BQ31612 363 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 TMEM71Q6P5X7 295 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 OGFOD3Q6PK18 319 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 HDDC2Q7Z4H3 204 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SLC22A24Q8N4F4 322 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 CSNK2A3Q8NEV1 391 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 OR10S1Q8NGN2 331 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 MAFAQ8NHW3 353 aaPredicted RBP12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 ZNF385AQ96PM9 386 aaKnown RBP12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 KCNK17Q96T54 332 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 ZNF416Q9BWM5 594 aa12.12□□□□□ -0.47
PRPF40B-209ENST00000548825 SHANK1Q9Y566 2161 aa12.11□□□□□ -0.47
PRPF40B-209ENST00000548825 IGHV5-10-1A0A0J9YXX1 117 aa12.11□□□□□ -0.47
PRPF40B-209ENST00000548825 RAB27BO00194 218 aa12.11□□□□□ -0.47
PRPF40B-209ENST00000548825 GUSBP08236 651 aa12.11□□□□□ -0.47
PRPF40B-209ENST00000548825 UBCP0CG48 685 aaKnown RBP12.11□□□□□ -0.47
PRPF40B-209ENST00000548825 FCGR2AP12318 317 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms