RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NMES1Q9C002 83 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 MS4A7Q9GZW8 240 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 MANBALQ9NQG1 85 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SLC35D1Q9NTN3 355 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 DNAJB12Q9NXW2 375 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 ANGPTL7O43827 346 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 DOK2O60496 412 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 HPNP05981 417 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 PGA3P0DJD8 388 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 BLVRBP30043 206 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 RPL35P42766 123 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 BIDP55957 195 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 LGALSLQ3ZCW2 172 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 TRMT12Q53H54 448 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 WDR73Q6P4I2 378 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 NUFIP2Q7Z417 695 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 OPALINQ96PE5 141 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 IL20Q9NYY1 176 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 A0A1W2PQD3 144 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SMIM30A4D0T7 59 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SMAD7O15105 426 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 NCR1O76036 304 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SORBS2O94875 1100 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 FBP1P09467 338 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 TNFRSF1BP20333 461 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 COX5AP20674 150 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 PSMB6P28072 239 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 LIPAP38571 399 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 BTG2P78543 158 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SLC17A1Q14916 467 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 AANATQ16613 207 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 ADAM5Q6NVV9 412 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 TMEM108Q6UXF1 575 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 TSEN54Q7Z6J9 526 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 ANAPC16Q96DE5 110 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SELENOIQ9C0D9 397 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SERTAD4Q9NUC0 356 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 TRGV5A0A0B4J1U4 118 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 RAB27BO00194 218 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 PHF1O43189 567 aaPredicted RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 CD22P20273 847 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 PAX6P26367 422 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 SHC1P29353 583 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 RPS18P62269 152 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 ENDOGQ14249 297 aaKnown RBP7.08□□□□□ -1.28
VPS13D-211ENST00000543710 CDC20BQ86Y33 519 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 OR2G3Q8NGZ4 309 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 APH1AQ96BI3 265 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 FAM234AQ9H0X4 552 aa7.08□□□□□ -1.28
VPS13D-211ENST00000543710 A0A0B4J2A0 478 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 PRSS37A4D1T9 235 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 B4E171 279 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 OR2C1O95371 312 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 BSGP35613 385 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 TSPAN7P41732 249 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 ZNF626Q68DY1 528 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 OGFOD3Q6PK18 319 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 Q6ZRG5 221 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 COX15Q7KZN9 410 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 FAM213BQ8TBF2 198 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 PIK3IP1Q96FE7 263 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 NPAS1Q99742 590 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 ACOXLQ9NUZ1 547 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 HAO2Q9NYQ3 351 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 OR5V1Q9UGF6 321 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 SHPKQ9UHJ6 478 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 DAPP1Q9UN19 280 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 RNASEK-C17orf49H0YIS7 233 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 LDB3O75112 727 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 TUSC2O75896 110 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 H2AFB1P0C5Y9 115 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 C21orf33P30042 268 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 RPL11P62913 178 aaKnown RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 ARL16Q0P5N6 197 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 SRSF5Q13243 272 aaKnown RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 CLINT1Q14677 625 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 ARIH2OSQ8N7S6 290 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 RPUSD4Q96CM3 377 aaKnown RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 NIPSNAP1Q9BPW8 284 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 FAM173AQ9BQD7 235 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 SRRQ9GZT4 340 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 SHANK3Q9BYB0 1731 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 MEIKINA0A087WXM9 373 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 PLPP1O14494 284 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 RAB13P51153 203 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 DSCR4P56555 118 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 EBPQ15125 230 aaKnown RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 IAH1Q2TAA2 248 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 TRNP1Q6NT89 227 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 DBX2Q6ZNG2 339 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 OR13D1Q8NGV5 346 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 EDARADDQ8WWZ3 215 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 TMEM18Q96B42 140 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 UFSP2Q9NUQ7 469 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 AK3Q9UIJ7 227 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 SMAD9O15198 467 aaKnown RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 SMAD6O43541 496 aaKnown RBP7.07□□□□□ -1.28
VPS13D-211ENST00000543710 PMP2P02689 132 aa7.07□□□□□ -1.28
VPS13D-211ENST00000543710 ZNF44P15621 663 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms