RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ACOT6Q3I5F7 207 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 THEM4Q5T1C6 240 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 H2BFWTQ7Z2G1 175 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 MFSD4AQ8N468 514 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 PPP1R3CQ9UQK1 317 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF727A8MUV8 499 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 IL3RAP26951 378 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 EPHA2P29317 976 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 SOX18P35713 384 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 VEGFBP49765 207 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 RRADP55042 308 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 SNRPNP63162 240 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 INPP5JQ15735 1006 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 OR13C5Q8NGS8 318 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 LILRB1Q8NHL6 650 aaPredicted RBP9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 CMTM2Q8TAZ6 248 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 MS4A10Q96PG2 267 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 FAM234AQ9H0X4 552 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 TBC1D29Q9UFV1 150 aa9.32□□□□□ -0.92
LIMCH1-203ENST00000396595 CD3DP04234 171 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ACAA1P09110 424 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 RPA2P15927 270 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 SELENBP1Q13228 472 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 CALHM3Q86XJ0 350 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 EMC6Q9BV81 110 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 JAM3Q9BX67 310 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 AKIRIN1Q9H9L7 192 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF749O43361 778 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF354AO60765 605 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 CD37P11049 281 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 RBPJQ06330 500 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 OR5I1Q13606 314 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 TBC1D28Q2M2D7 210 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 CHAC2Q8WUX2 184 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 C2orf50Q96LR7 162 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ATF6BQ99941 703 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 SLC5A6Q9Y289 635 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 R4GMQ9 66 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 RAB29O14966 203 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 NXPH3O95157 252 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 EPXP11678 715 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 DTYMKP23919 212 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 KIR2DL3P43628 341 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 AMTP48728 403 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 MMP15P51511 669 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEM268Q5VZI3 342 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 LYG2Q86SG7 212 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 GALNT16Q8N428 558 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ST8SIA1Q92185 356 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 FER1L6-AS2Q96M78 137 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 OR2A14Q96R47 310 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 TP53RKQ96S44 253 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 CTDSP1Q9GZU7 261 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 S1PR5Q9H228 398 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 KCND3Q9UK17 655 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 OR5H15A6NDH6 313 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 OR5H1A6NKK0 313 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 PPOXP50336 477 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 EDDM3BP56851 147 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF528Q3MIS6 628 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 VHLLQ6RSH7 139 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 STT3BQ8TCJ2 826 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 NUDCD2Q8WVJ2 157 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 NXPE3Q969Y0 559 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 APH1AQ96BI3 265 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 SIGLEC11Q96RL6 698 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 RTL8AQ9BWD3 113 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF385DQ9H6B1 395 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 MICAL3Q7RTP6 2002 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 NWD2Q9ULI1 1742 aa9.31□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A1W2PPQ1 181 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 XKRY2A2RUG3 117 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 C5orf52A6NGY3 159 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 NKX6-3A6NJ46 265 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 K7EQM0 130 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 IL5P05113 134 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 PRR35P0CG20 571 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEM11P17152 192 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TCN2P20062 427 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 UBE2MP61081 183 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ZBTB37Q5TC79 503 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF626Q68DY1 528 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TSLPQ969D9 159 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ATG101Q9BSB4 218 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SLIRPQ9GZT3 109 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF552Q9H707 407 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 AUNIPQ9H7T9 357 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 CTSFQ9UBX1 484 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A1B0GTQ1 180 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 PRSS37A4D1T9 235 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 AQP7P3A6NL99 342 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 AP4M1O00189 453 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SIAH2O43255 324 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 OR5H8P0DN80 308 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ADPRHP54922 357 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 B2MP61769 119 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 PMS2P11Q13670 270 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 RPUSD3Q6P087 351 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 RPS19BP1Q86WX3 136 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 BAHD1Q8TBE0 780 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms