RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TEX38Q6PEX7 206 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 CPNE8Q86YQ8 564 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 LINC01465Q8N7H1 131 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 NANOGP1Q8N7R0 232 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 KDF1Q8NAX2 398 aaPredicted RBP3.66□□□□□ -1.82
USH2A-202ENST00000366942 RELL2Q8NC24 303 aaPredicted RBP3.66□□□□□ -1.82
USH2A-202ENST00000366942 BHLHE23Q8NDY6 225 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 BPIFCQ8NFQ6 507 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 OR52B4Q8NGK2 314 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 MIB2Q96AX9 1013 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 ISOC1Q96CN7 298 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 SLC29A1Q99808 456 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 WWTR1Q9GZV5 400 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 DLL3Q9NYJ7 618 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 DOPEY1Q5JWR5 2465 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 A0A087WXM4 84 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 M0R135 149 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 DLGAP1O14490 977 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 SLC31A2O15432 143 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 ZNF254O75437 659 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 PIAS1O75925 651 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 ZNF17P17021 662 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 GZMHP20718 246 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 HTR2BP41595 481 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 PFN3P60673 137 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 UBE2G1P62253 170 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 RELQ04864 619 aaPredicted RBP3.66□□□□□ -1.82
USH2A-202ENST00000366942 MRPL58Q14197 206 aaKnown RBP3.66□□□□□ -1.82
USH2A-202ENST00000366942 LY6EQ16553 131 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 SPINK14Q6IE38 97 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 GPRIN1Q7Z2K8 1008 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 ADGRG5Q8IZF4 528 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 ZNF799Q96GE5 643 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 C16orf92Q96LL3 132 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 IL4I1Q96RQ9 567 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 P2RX4Q99571 388 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 TTTY12Q9BZ98 90 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 PLA2G2FQ9BZM2 168 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 SLC35D1Q9NTN3 355 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 TREM2Q9NZC2 230 aa3.66□□□□□ -1.82
USH2A-202ENST00000366942 TNFSF11O14788 317 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 TRAF3IP2O43734 574 aaPredicted RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 SSX5O60225 188 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 SAP30O75446 220 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 CDK2AP2O75956 126 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 CEACAM5P06731 702 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 FOLR1P15328 257 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 PTGFRP43088 359 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 GPR4P46093 362 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 CYCSP99999 105 aaKnown RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 HSF1Q00613 529 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 TFAP2EQ6VUC0 442 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 PAQR4Q8N4S7 273 aaPredicted RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 OR10J5Q8NHC4 309 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 ARRDC2Q8TBH0 407 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 CLEC4CQ8WTT0 213 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 GIMAP1Q8WWP7 306 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 IL22RA2Q969J5 263 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 RNF183Q96D59 192 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 RAB33BQ9H082 229 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 WDR76Q9H967 626 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 SIX4Q9UIU6 781 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 PRELID1Q9Y255 219 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 POLR1AO95602 1720 aaPredicted RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 LINC00854A0A1B0GVQ3 168 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 AP4M1O00189 453 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 GABRPO00591 440 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 PPP1R11O60927 126 aaPredicted RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 RBBP9O75884 186 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 RORCP51449 518 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 RPL30P62888 115 aaKnown RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 ATP5G2Q06055 141 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 GPR50Q13585 617 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 ATXN7L3Q14CW9 347 aaPredicted RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 GAB4Q2WGN9 574 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 CDNFQ49AH0 187 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 LYRM7Q5U5X0 104 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 COMMD7Q86VX2 200 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 NKAIN4Q8IVV8 208 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 KLHDC8BQ8IXV7 354 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 FDCSPQ8NFU4 85 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 OR9Q2Q8NGE9 314 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 OR5AP2Q8NGF4 316 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 OR9I1Q8NGQ6 314 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 MRAP2Q96G30 205 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 SCMH1Q96GD3 660 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 RBM14Q96PK6 669 aaKnown RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 OR5B12Q96R08 314 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 ACPTQ9BZG2 426 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 G6PC2Q9NQR9 355 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 PARP11Q9NR21 331 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 SMCO4Q9NRQ5 59 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 RCE1Q9Y256 329 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 PCYT1BQ9Y5K3 369 aaPredicted RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 HIVEP2P31629 2446 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 BAZ2BQ9UIF8 2168 aaKnown RBP3.65□□□□□ -1.82
USH2A-202ENST00000366942 CACNA1AO00555 2505 aa3.65□□□□□ -1.82
USH2A-202ENST00000366942 TMEM210A6NLX4 147 aa3.65□□□□□ -1.83
USH2A-202ENST00000366942 MEIS3P2A8K0S8 358 aa3.65□□□□□ -1.83
USH2A-202ENST00000366942 HSBP1L1C9JCN9 74 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms