RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 NUBPLQ8TB37 319 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 NUDT16L1Q9BRJ7 211 aaKnown RBP16.63■□□□□ 0.25
CPSF3-201ENST00000238112 PCED1AQ9H1Q7 454 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 MOB1AQ9H8S9 216 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 TRBV11-1A0A0K0K1C0 115 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 PMP2P02689 132 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 FOSL2P15408 326 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 CNR1P21554 472 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 CASRP41180 1078 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 MYBPHQ13203 477 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 GAREM1Q9H706 876 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 FANCFQ9NPI8 374 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 SDHAF3Q9NRP4 125 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 KLHL13Q9P2N7 655 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 B3GAT1Q9P2W7 334 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 FBLN5Q9UBX5 448 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 PISDQ9UG56 409 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 CA14Q9ULX7 337 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 TMEM14DPA8MWL7 114 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 EEF1E1-BLOC1S5C9J1V9 151 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF878C9JN71 531 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 F5H0A9 414 aaPredicted RBP16.62■□□□□ 0.25
CPSF3-201ENST00000238112 NUPL2O15504 423 aaKnown RBP16.62■□□□□ 0.25
CPSF3-201ENST00000238112 DUS4LO95620 317 aaKnown RBP16.62■□□□□ 0.25
CPSF3-201ENST00000238112 RHBDD2Q6NTF9 364 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF529Q6P280 563 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 OR2W3Q7Z3T1 314 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 NFAM1Q8NET5 270 aaPredicted RBP16.62■□□□□ 0.25
CPSF3-201ENST00000238112 OR4K15Q8NH41 348 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 MRPL13Q9BYD1 178 aaKnown RBP16.62■□□□□ 0.25
CPSF3-201ENST00000238112 CHRDQ9H2X0 955 aa16.62■□□□□ 0.25
CPSF3-201ENST00000238112 BARX1Q9HBU1 254 aaPredicted RBP16.62■□□□□ 0.25
CPSF3-201ENST00000238112 C5orf51A6NDU8 294 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 EFSO43281 561 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 SSX5O60225 188 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 IGHG1P01857 330 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 CHRM2P08172 466 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 CTRB1P17538 263 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 SNTB1Q13884 538 aaKnown RBP16.61■□□□□ 0.25
CPSF3-201ENST00000238112 CTRB2Q6GPI1 263 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 WDR74Q6RFH5 385 aaPredicted RBP16.61■□□□□ 0.25
CPSF3-201ENST00000238112 GLIPR1L1Q6UWM5 242 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 ABHD12BQ7Z5M8 362 aaPredicted RBP16.61■□□□□ 0.25
CPSF3-201ENST00000238112 MRGPRX4Q96LA9 322 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 SPACA5Q96QH8 159 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 NICN1Q9BSH3 213 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF768Q9H5H4 540 aaKnown RBP16.61■□□□□ 0.25
CPSF3-201ENST00000238112 MBD2Q9UBB5 411 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 FER1L5A0AVI2 2057 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 TAS2R31P59538 309 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 PAN3Q58A45 887 aaKnown RBP16.61■□□□□ 0.25
CPSF3-201ENST00000238112 FAM122CQ6P4D5 195 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 NOXO1Q8NFA2 376 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 ELP5Q8TE02 316 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 TMEM41AQ96HV5 264 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 MRPS28Q9Y2Q9 187 aaKnown RBP16.61■□□□□ 0.25
CPSF3-201ENST00000238112 LHFPL6Q9Y693 200 aa16.61■□□□□ 0.25
CPSF3-201ENST00000238112 SPAG17Q6Q759 2223 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 ASXL3Q9C0F0 2248 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 VCANP13611 3396 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 UNC13CQ8NB66 2214 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 C13orf42A0A1B0GVH6 325 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 SULT2B1O00204 365 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 EFNA2O43921 213 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 MPIG6BO95866 241 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 MSX1P28360 303 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 FOXK1P85037 733 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 CCDC36Q8IYA8 594 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 MARCH1Q8TCQ1 289 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 ARPC5LQ9BPX5 153 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 HRH3Q9Y5N1 445 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 TRIOO75962 3097 aa16.6■□□□□ 0.25
CPSF3-201ENST00000238112 ETV2O00321 342 aaPredicted RBP16.59■□□□□ 0.25
CPSF3-201ENST00000238112 OPN1LWP04000 364 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 ABOP16442 354 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 DEFA5Q01523 94 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 INPP5JQ15735 1006 aaPredicted RBP16.59■□□□□ 0.25
CPSF3-201ENST00000238112 PLPPR5Q32ZL2 321 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 RTN4RL2Q86UN3 420 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 TMEM185AQ8NFB2 350 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 FBXW5Q969U6 566 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 RAB3CQ96E17 227 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 NARS2Q96I59 477 aaKnown RBP16.59■□□□□ 0.25
CPSF3-201ENST00000238112 LPAR5Q9H1C0 372 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 METTL7AQ9H8H3 244 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 CHMP1AQ9HD42 196 aaPredicted RBP16.59■□□□□ 0.25
CPSF3-201ENST00000238112 WDPCPO95876 746 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 PGA4P0DJD7 388 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 PGA3P0DJD8 388 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 SLC2A1P11166 492 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 CDAP32320 146 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 PPIAP62937 165 aaKnown RBP16.59■□□□□ 0.25
CPSF3-201ENST00000238112 GABREP78334 506 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 NKAIN1Q4KMZ8 207 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 CARD17Q5XLA6 110 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 PTCRAQ6ISU1 281 aaPredicted RBP16.59■□□□□ 0.25
CPSF3-201ENST00000238112 ATRAIDQ6UW56 229 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 RABEPKQ7Z6M1 372 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 HOGA1Q86XE5 327 aa16.59■□□□□ 0.25
CPSF3-201ENST00000238112 SLC25A45Q8N413 288 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms