RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PHB2Q99623 299 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PRRT1Q99946 306 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 LRRC61Q9BV99 259 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ACTR3CQ9C0K3 210 aaPredicted RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 SLC5A7Q9GZV3 580 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ATG5Q9H1Y0 275 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 HIPK2Q9H2X6 1198 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PELI2Q9HAT8 420 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 CHMP1AQ9HD42 196 aaPredicted RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 STEAP1Q9UHE8 339 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 WDFY4Q6ZS81 3184 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PRAMEF27A3QJZ7 478 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 C7orf77A4D0Y5 90 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 A6NIN4 97 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 RIIAD1A6NNX1 92 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 CEACAM18A8MTB9 384 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 NTN3O00634 580 aaPredicted RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 TGFAP01135 160 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MYF5P13349 255 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 NQO2P16083 231 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 NDUFB7P17568 137 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 FGF7P21781 194 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 NFYBP25208 207 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PSMB6P28072 239 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 IMPA1P29218 277 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MANFP55145 182 aaKnown RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 SKP1P63208 163 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 FAM3AP98173 230 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 DHRS2Q13268 280 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MEP1BQ16820 701 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PRSS54Q6PEW0 395 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 Q6ZSR6 202 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 LRRTM1Q86UE6 522 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 AMZ2Q86W34 360 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 TMEFF1Q8IYR6 380 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 GABRG1Q8N1C3 465 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ZNF417Q8TAU3 575 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PPP1R1CQ8WVI7 109 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 RLN3Q8WXF3 142 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ASB17Q8WXJ9 295 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 OR1E3Q8WZA6 343 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PELI1Q96FA3 418 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 RRNAD1Q96FB5 475 aaKnown RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 CD180Q99467 661 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MICU1Q9BPX6 476 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 SOX7Q9BT81 388 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ARV1Q9H2C2 271 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 OR52D1Q9H346 318 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 POFUT1Q9H488 388 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MEPEQ9NQ76 525 aaPredicted RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 KCNG2Q9UJ96 466 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 TUBD1Q9UJT1 453 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ADAM18Q9Y3Q7 739 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 OR10H1Q9Y4A9 318 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 TMEM269A0A1B0GVZ9 245 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 TMEM210A6NLX4 147 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 PIN1P1O15428 100 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 ZNF208O43345 1280 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 CDC40O60508 579 aaKnown RBP eCLIP4.71□□□□□ -1.65
USP28-213ENST00000544967 DUS4LO95620 317 aaKnown RBP4.71□□□□□ -1.65
USP28-213ENST00000544967 RLN1P04808 185 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 ZGLP1P0C6A0 271 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 CXCR1P25024 350 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 PRSS3P35030 304 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 CRMP1Q14194 572 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 PRSS53Q2L4Q9 553 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 HLA-BQ31612 363 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 Q499Y3 187 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 ZNF684Q5T5D7 378 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 DHRS11Q6UWP2 260 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 Q6ZVL8 140 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 UBE3DQ7Z6J8 389 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 DMRTC2Q8IXT2 367 aaPredicted RBP4.71□□□□□ -1.65
USP28-213ENST00000544967 ZNF595Q8IYB9 648 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 OR2L13Q8N349 312 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 SLC25A45Q8N413 288 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 CLDN19Q8N6F1 224 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 OR2L2Q8NH16 312 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 OR5AK3PQ8NH89 298 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 PAQR8Q8TEZ7 354 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 PIGKQ92643 395 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 ZBTB8AQ96BR9 441 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 PTCHD1Q96NR3 888 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 CNN2Q99439 309 aaKnown RBP4.71□□□□□ -1.65
USP28-213ENST00000544967 SULT4A1Q9BR01 284 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 ADAT1Q9BUB4 502 aaKnown RBP4.71□□□□□ -1.65
USP28-213ENST00000544967 OR51V1Q9H2C8 321 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 DPEP2Q9H4A9 486 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 NGBQ9NPG2 151 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 AK6Q9Y3D8 172 aaKnown RBP4.71□□□□□ -1.65
USP28-213ENST00000544967 PIKFYVEQ9Y2I7 2098 aa4.71□□□□□ -1.65
USP28-213ENST00000544967 CACNA1AO00555 2505 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SLC5A10A0PJK1 596 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 LILRA5A6NI73 299 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 IFITM10A6NMD0 228 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 A8MWP6 167 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ZNF587BE7ETH6 402 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 J3QLW9 94 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SIGLEC5O15389 551 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms