RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ARL8BQ9NVJ2 186 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 MRPL22Q9NWU5 206 aaKnown RBP13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF69Q9UC07 566 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 MIOXQ9UGB7 285 aa13.89□□□□□ -0.19
CCDC28B-204ENST00000469003 LRRC30A6NM36 301 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 KRT36O76013 467 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF205O95201 554 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 LCATP04180 440 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 RPS2P15880 293 aaKnown RBP13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF823P16415 610 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 GATA4P43694 442 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 HMGA2P52926 109 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 TPTEP56180 551 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 PAX2Q02962 417 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 PAX8Q06710 450 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 MALLQ13021 153 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 SLC35F1Q5T1Q4 408 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 RPL13AP3Q6NVV1 102 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 C16orf89Q6UX73 402 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 DOK3Q7L591 496 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 NAA40Q86UY6 237 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 KLBQ86Z14 1044 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 CELF2-AS1Q8N7Q2 184 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 OR52L1Q8NGH7 329 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 TMEM246Q9BRR3 403 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 EGLN3Q9H6Z9 239 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 NDE1Q9NXR1 346 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 PPIAL4AQ9Y536 164 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 CDH10Q9Y6N8 788 aa13.88□□□□□ -0.19
CCDC28B-204ENST00000469003 IGHV3-64DA0A0J9YX35 117 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 HLA-DPB1P04440 258 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 PMELP40967 661 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 CD200P41217 278 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 PRSS12P56730 875 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 GNB2P62879 340 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF404Q494X3 552 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 CLEC12AQ5QGZ9 265 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 PGAP1Q75T13 922 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 DEFB107AQ8IZN7 70 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 LINC00471Q8N535 108 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 ERGIC1Q969X5 290 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 SLCO4A1Q96BD0 722 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 NEIL1Q96FI4 390 aaPredicted RBP13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 PLEKHA8Q96JA3 519 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 MAP6Q96JE9 813 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 DDOQ99489 341 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 ARL2BPQ9Y2Y0 163 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 LYVE1Q9Y5Y7 322 aa13.87□□□□□ -0.19
CCDC28B-204ENST00000469003 M0R135 149 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 BHLHE40O14503 412 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 PPIAL4GP0DN37 164 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 IRF2P14316 349 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 PYCR1P32322 319 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 CD80P33681 288 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 MAB21L1Q13394 359 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 AWAT1Q58HT5 328 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 BTNL3Q6UXE8 466 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 LRRN1Q6UXK5 716 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 MRPL21Q7Z2W9 205 aaKnown RBP13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 CYB561A3Q8NBI2 242 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 PROKR2Q8NFJ6 384 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 OR9Q2Q8NGE9 314 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 OR8B3Q8NGG8 313 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 OR10S1Q8NGN2 331 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 OR2T4Q8NH00 348 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 Q8TCH9 128 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 SPRYD4Q8WW59 207 aaPredicted RBP13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 RAB40AQ8WXH6 277 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 SPTSSAQ969W0 71 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 DACT3Q96B18 629 aaPredicted RBP13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF799Q96GE5 643 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 OR8B2Q96RD0 313 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 BTBD10Q9BSF8 475 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 TRIM15Q9C019 465 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 ZMAT3Q9HA38 289 aaKnown RBP13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 IL20Q9NYY1 176 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 NOP16Q9Y3C1 178 aaKnown RBP13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 DOCK11Q5JSL3 2073 aa13.86□□□□□ -0.19
CCDC28B-204ENST00000469003 IGHV2-70DA0A0C4DH43 119 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 TNFRSF11BO00300 401 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 KCNAB3O43448 404 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 DCTN3O75935 186 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 HKR1P10072 659 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 PRTN3P24158 256 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 RAD23AP54725 363 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 MXRA7P84157 204 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 FAM201AQ5SY85 155 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 ZNF362Q5T0B9 420 aaPredicted RBP13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 NLRC3Q7RTR2 1065 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 PIGWQ7Z7B1 504 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 BCL6BQ8N143 479 aaPredicted RBP13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 OR11L1Q8NGX0 322 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 MS4A7Q9GZW8 240 aaPredicted RBP13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 SLC22A4Q9H015 551 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 ACTR3BQ9P1U1 418 aa13.85□□□□□ -0.19
CCDC28B-204ENST00000469003 TGP01266 2768 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 DNAJC9-AS1A6NH13 148 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 TVP23AA6NH52 213 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 CD300LBA8K4G0 201 aa13.84□□□□□ -0.19
CCDC28B-204ENST00000469003 FAM20BO75063 409 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms