RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 LILRB4Q8NHJ6 448 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 M1APQ8TC57 530 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PHF10Q8WUB8 498 aaKnown RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 EEF1AKMT1Q8WVE0 214 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SLC5A11Q8WWX8 675 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 LHX4Q969G2 390 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 NEIL2Q969S2 332 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PIK3IP1Q96FE7 263 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CFAP36Q96G28 342 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 OR4K3Q96R72 315 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 NAP1L3Q99457 506 aaPredicted RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 VAT1Q99536 393 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 FOXC2Q99958 501 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CARD6Q9BX69 1037 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 TM2D1Q9BX74 207 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 TSSK1BQ9BXA7 367 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 HCAR1Q9BXC0 346 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ABCA2Q9BZC7 2435 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SLC5A7Q9GZV3 580 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CHRNA10Q9GZZ6 450 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 OPN3Q9H1Y3 402 aaPredicted RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 NTN4Q9HB63 628 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF331Q9NQX6 463 aaPredicted RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 C20orf96Q9NUD7 363 aaPredicted RBP2.04□□□□□ -2.08
SCFD1-219ENST00000556413 KLHL28Q9NXS3 571 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CLEC4AQ9UMR7 237 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 PDE10AQ9Y233 779 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 SLC9A8Q9Y2E8 581 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF175Q9Y473 711 aa2.04□□□□□ -2.08
SCFD1-219ENST00000556413 CMYA5Q8N3K9 4069 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 KIAA1549Q9HCM3 1950 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 RAI1Q7Z5J4 1906 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 IGKV3D-11A0A0A0MRZ8 115 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 TRGV5A0A0B4J1U4 118 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 TUBAL3A6NHL2 446 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 GFYI3L273 518 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 PDLIM1O00151 329 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 CDC7O00311 574 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 EI24O14681 340 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 FMO6PO60774 539 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 GLSO94925 669 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ETHE1O95571 254 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 FGGP02679 453 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 OPN1LWP04000 364 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 TPM1P09493 284 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 SLC35G6P0C7Q6 338 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 TNNI3P19429 210 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 FUT3P21217 361 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 IGHV1-2P23083 117 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 RPS3P23396 243 aaKnown RBP eCLIP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ANP32AP39687 249 aaKnown RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 NPY2RP49146 381 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 TTPAP49638 278 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 CCR8P51685 355 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 DIO3P55073 304 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 RPS15AP62244 130 aaKnown RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 HERVK_113P63132 956 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ERVK-8P63133 956 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 KCNJ2P63252 427 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ACVR1Q04771 509 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 EXOC3L2Q2M3D2 409 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ZNF674Q2M3X9 581 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 KRTAP21-3Q3LHN1 58 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ACSF3Q4G176 576 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 OR5M10Q6IEU7 315 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 H3F3CQ6NXT2 135 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 CYHR1Q6ZMK1 362 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 BIVMQ86UB2 503 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 SLC13A5Q86YT5 568 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 LIX1Q8N485 282 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 UBL4BQ8N7F7 174 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ARIH2OSQ8N7S6 290 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 SNX31Q8N9S9 440 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ZFP62Q8NB50 900 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 B3GNT7Q8NFL0 401 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 OR52J3Q8NH60 311 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 MCOLN3Q8TDD5 553 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ST7LQ8TDW4 575 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 DNAJA3Q96EY1 480 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 C11orf24Q96F05 449 aaPredicted RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 C5orf30Q96GV9 206 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 MS4A14Q96JA4 679 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 FAM111AQ96PZ2 611 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 CCL19Q99731 98 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 C19orf24Q9BVV8 132 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ERVK-6Q9BXR3 956 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ALG9Q9H6U8 611 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 PLEKHF2Q9H8W4 249 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ANKRA2Q9H9E1 313 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 CAB39LQ9H9S4 337 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 PROK2Q9HC23 129 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 SH2D2AQ9NP31 389 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 PRTFDC1Q9NRG1 225 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 YAE1D1Q9NRH1 226 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 ERVK-18Q9QC07 812 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 KCNN3Q9UGI6 736 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 TRMT6Q9UJA5 497 aaKnown RBP2.03□□□□□ -2.08
SCFD1-219ENST00000556413 GUCA1BQ9UMX6 200 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 CHMP2BQ9UQN3 213 aa2.03□□□□□ -2.08
SCFD1-219ENST00000556413 SLC22A14Q9Y267 594 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms