RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PLCXD1Q9NUJ7 323 aa7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 CNOT2Q9NZN8 540 aaKnown RBP7.77□□□□□ -1.16
LIMCH1-209ENST00000509277 MYO7BQ6PIF6 2116 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 CPT2P23786 658 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 MAP3K8P41279 467 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SLC1A3P43003 542 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SMIM11AP58511 58 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 ZP1P60852 638 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 RAB2AP61019 212 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 RTP5Q14D33 572 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SGCBQ16585 318 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 NKPD1Q17RQ9 610 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SFXN4Q6P4A7 337 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SVBPQ8N300 66 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 OR52I2Q8NH67 350 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 RXFP4Q8TDU9 374 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 FBLIM1Q8WUP2 373 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 MRPS24Q96EL2 167 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 UBL7Q96S82 380 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 CXorf65A6NEN9 183 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 ACOD1A6NK06 481 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 ALG1L2C9J202 215 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SUSD5O60279 629 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 DKK1O94907 266 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 ITGB2P05107 769 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 CELA3AP09093 270 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 CD46P15529 392 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 P2RX1P51575 399 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SNTB1Q13884 538 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 TP53I3Q53FA7 332 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 CLEC9AQ6UXN8 241 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 OR52N1Q8NH53 320 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 OR56B4Q8NH76 319 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 ZCCHC14Q8WYQ9 949 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 MRPL48Q96GC5 212 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 SLC19A3Q9BZV2 496 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 PCDHB10Q9UN67 800 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 MSRB2Q9Y3D2 182 aa7.77□□□□□ -1.17
LIMCH1-209ENST00000509277 TMED7-TICAM2A0A0A6YYA0 188 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 C5orf51A6NDU8 294 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 K7EM74 188 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF432O94892 652 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 BMP7P18075 431 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 PSMB1P20618 241 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ACAA2P42765 397 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 NPBWR1P48145 328 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 AP3S2P59780 193 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 PLAURQ03405 335 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF141Q15928 474 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 Q3ZCU0 254 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 RGS7BPQ6MZT1 257 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ULK3Q6PHR2 472 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 TFAP2EQ6VUC0 442 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 FCRLAQ7L513 359 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 JAZF1Q86VZ6 243 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 LDLRAD3Q86YD5 345 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 OR6S1Q8NH40 331 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 OR5W2Q8NH69 310 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 LGALS14Q8TCE9 139 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 THAP4Q8WY91 577 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 BPIFA2Q96DR5 249 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ARL5BQ96KC2 179 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 SAMD8Q96LT4 415 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 WDFY2Q96P53 400 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 DEPPQ9NTK1 212 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 BABAM2Q9NXR7 383 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 TESQ9UGI8 421 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 TMED7Q9Y3B3 224 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 DSPPQ9NZW4 1301 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 MEIKINA0A087WXM9 373 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 A0A0B4J2A0 478 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 PINLYPA6NC86 204 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ZAR1LA6NP61 321 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 MCRIP1C9JLW8 97 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 NPIPA5E9PKD4 350 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 SYT5O00445 386 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 EIF1AYO14602 144 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 NDUFA2O43678 99 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 PMP2P02689 132 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 THY1P04216 161 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 RBM34P42696 430 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 MAGEA5P43359 124 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 EIF1AXP47813 144 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 BATFQ16520 125 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 CARD17Q5XLA6 110 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 WBP2NLQ6ICG8 309 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 GTPBP8Q8N3Z3 284 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF441Q8N8Z8 693 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 NAXEQ8NCW5 288 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 APOBEC4Q8WW27 367 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 KTI12Q96EK9 354 aaPredicted RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 IP6K3Q96PC2 410 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 GPA33Q99795 319 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ARHGDIGQ99819 225 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 TAPBPLQ9BX59 468 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 MRPL22Q9NWU5 206 aaKnown RBP7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 KLHL13Q9P2N7 655 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 SHPKQ9UHJ6 478 aa7.76□□□□□ -1.17
LIMCH1-209ENST00000509277 ZNF230Q9UIE0 474 aaPredicted RBP7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms