RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 H2BFMP0C1H6 154 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 GP1BBP13224 206 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 RIDAP52758 137 aaKnown RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 BLOC1S1P78537 153 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 SLC17A1Q14916 467 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 OR2W3Q7Z3T1 314 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 ADGRG3Q86Y34 549 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 ZNF615Q8N8J6 731 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 TMEM104Q8NE00 496 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 BVESQ8NE79 360 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 SLC2A12Q8TD20 617 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 SCARB1Q8WTV0 552 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 PTPMT1Q8WUK0 201 aaPredicted RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 DYRK2Q92630 601 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 DCBLD2Q96PD2 775 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 LRRC61Q9BV99 259 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 JAM3Q9BX67 310 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 CNTD2Q9H8S5 307 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 LYRM4Q9HD34 91 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 SLC22A11Q9NSA0 550 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 R4GN57 208 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 TMED7-TICAM2A0A0A6YYA0 188 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 OR2M5A3KFT3 312 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 ZNF98A6NK75 572 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 D6RAR5 112 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 F5H5K5 113 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 GPRIN2O60269 458 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 RCC1P18754 421 aaPredicted RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 SERPINF1P36955 418 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 FZD2Q14332 565 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 ZNF273Q14593 569 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 EBPQ15125 230 aaKnown RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 ABHD12BQ7Z5M8 362 aaPredicted RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 ATG4DQ86TL0 474 aaPredicted RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 OR51F2Q8NH61 342 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 KLHDC7BQ96G42 594 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 CMSS1Q9BQ75 279 aaKnown RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 CA14Q9ULX7 337 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 RHBDD3Q9Y3P4 386 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 IGHV3-64DA0A0J9YX35 117 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 SULT1C2O00338 296 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 LBX1P52954 281 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 LY6G6FQ5SQ64 297 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 SLC36A1Q7Z2H8 476 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 FAM122BQ7Z309 247 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 MYPOPQ86VE0 399 aaPredicted RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 ANGPTL5Q86XS5 388 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 CDC20BQ86Y33 519 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 CDH26Q8IXH8 852 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 PNLDC1Q8NA58 520 aaKnown RBP7.75□□□□□ -1.17
USP40-203ENST00000427112 THAP6Q8TBB0 222 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 CSAG2Q9Y5P2 127 aa7.75□□□□□ -1.17
USP40-203ENST00000427112 LOC100289279A0A1B0GTE1 492 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 MSGN1A6NI15 193 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 C1orf196B1AJZ1 125 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 NPIPA5E9PKD4 350 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SOCS1O15524 211 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 RAB40ALP0C0E4 278 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 BCKDHBP21953 392 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PRMT2P55345 433 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 BIDP55957 195 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SKP2Q13309 424 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SGCAQ16586 387 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SP6Q3SY56 376 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PDZD11Q5EBL8 140 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SLC18B1Q6NT16 456 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PAPD4Q6PIY7 484 aaKnown RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 TMEM17Q86X19 198 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 WDSUB1Q8N9V3 476 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 OTOSQ8NHW6 89 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ASB5Q8WWX0 329 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 RAB40AQ8WXH6 277 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PNPLA2Q96AD5 504 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ADAT3Q96EY9 351 aaPredicted RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 MRPL48Q96GC5 212 aaKnown RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 CHRDQ9H2X0 955 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SLC2A4RGQ9NR83 387 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PARPBPQ9NWS1 579 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 HAO2Q9NYQ3 351 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ZNF581Q9P0T4 197 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 NPIPA1Q9UND3 350 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 A6NCN8 305 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 RAMP1O60894 148 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 CRTAPO75718 401 aaPredicted RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 ABHD16AO95870 558 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 CD63P08962 238 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 PATE4P0C8F1 98 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 HYAL1Q12794 435 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 MANEAQ5SRI9 462 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 ANKRD16Q6P6B7 361 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 MISPQ8IVT2 679 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 INO80EQ8NBZ0 244 aaPredicted RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 TOMM40LQ969M1 308 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 CCDC74BQ96LY2 380 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 HDHD3Q9BSH5 251 aaPredicted RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 ZCCHC4Q9H5U6 513 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 AKIRIN1Q9H9L7 192 aaPredicted RBP7.74□□□□□ -1.17
USP40-203ENST00000427112 WNT16Q9UBV4 365 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 SUSD2Q9UGT4 822 aa7.74□□□□□ -1.17
USP40-203ENST00000427112 RFNGQ9Y644 331 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms