RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 BCL2L2Q92843 193 aaPredicted RBP4.45□□□□□ -1.7
CSMD3-201ENST00000297405 PERPQ96FX8 193 aa4.45□□□□□ -1.7
CSMD3-201ENST00000297405 GPR20Q99678 358 aa4.45□□□□□ -1.7
CSMD3-201ENST00000297405 TCF20Q9UGU0 1960 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 IFITM5A6NNB3 132 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 CORTO00230 105 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 PQBP1O60828 265 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 LRP3O75074 770 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF28P17035 718 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TACR2P21452 398 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SMAD3P84022 425 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 GPR162Q16538 588 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 EML3Q32P44 896 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 CELF2-AS1Q8N7Q2 184 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ARRDC3Q96B67 414 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 P2RX4Q99571 388 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TNFSF11O14788 317 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SPINT2O43291 252 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TSPAN3O60637 253 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 RHBDL1O75783 438 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TBX18O95935 607 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ARAFP10398 606 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 FCGR2CP31995 323 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 PGGT1BP53609 377 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 KLF3P57682 345 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 OC90Q02509 493 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 C9orf131Q5VYM1 1079 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 MRGPRGQ86SM5 289 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 NANOGP1Q8N7R0 232 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 LINC00116Q8NCU8 138 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 PDCD2LQ9BRP1 358 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TMEM167BQ9NRX6 74 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 M0QYG6 137 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 INHBEP58166 350 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 PAX5Q02548 391 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SELENBP1Q13228 472 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF776Q68DI1 518 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 H2BFWTQ7Z2G1 175 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 OR2A5Q96R48 311 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SLC45A2Q9UMX9 530 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 LINC01549A6NIU2 74 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 GPR25O00155 361 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ASGR2P07307 311 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 OR5AL1P0C617 328 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SMIM18P0DKX4 95 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 NDUFB7P17568 137 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 HIST1H1TP22492 207 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 AHRP35869 848 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 RAB9AP51151 201 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 FXYD4P59646 89 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ERHP84090 104 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SGCAQ16586 387 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SUSD4Q5VX71 490 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF761Q86XN6 746 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 NECAP1Q8NC96 275 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 FBXW5Q969U6 566 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SORT1Q99523 831 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 KCNK7Q9Y2U2 307 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 BDP1A6H8Y1 2624 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TCRBV7S2A1N4TA0A589 114 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 B4E171 279 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ATXN1LP0C7T5 689 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 LAG3P18627 525 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 GPX3P22352 226 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 MMP16P51512 607 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 METAP1P53582 386 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 RHOBP62745 196 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 CIRBPQ14011 172 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ELAVL3Q14576 367 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 GUCA2BQ16661 112 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 RAB6CQ53S08 254 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 CELF3Q5SZQ8 465 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 MRM1Q6IN84 353 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 FAM174AQ8TBP5 190 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 NUDT11Q96G61 164 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 BCO2Q9BYV7 579 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 BARHL1Q9BZE3 327 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SLIRPQ9GZT3 109 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 AAMDCQ9H7C9 122 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 METTL7AQ9H8H3 244 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 PIPOXQ9P0Z9 390 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 SLC27A5Q9Y2P5 690 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 A0A1B0GV90 55 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 OR2W5A6NFC9 320 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 UPK3BL1B0FP48 263 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 UPK3BL2E5RIL1 263 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 EIF1BO60739 113 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 LCATP04180 440 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 APODP05090 189 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 CORO1AP31146 461 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 IRS1P35568 1242 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 CD200P41217 278 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 C21orf58P58505 322 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ISL1P61371 349 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 RELBQ01201 579 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 RGNQ15493 299 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TRMT12Q53H54 448 aaKnown RBP4.44□□□□□ -1.7
CSMD3-201ENST00000297405 ZNF628Q5EBL2 1059 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 C18orf63Q68DL7 685 aa4.44□□□□□ -1.7
CSMD3-201ENST00000297405 TRAT1Q6PIZ9 186 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms